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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110434704   protein RDM16 
 zma-u.5   100217215   Pre-mRNA-splicing factor 3 
 zma-u.5   100279564   Pre-mRNA-splicing factor 3 
 osa-u.5   4346506   protein RDM16 
 ath-u.5   AT1G28060   Pre-mRNA-splicing factor 3 
 gma-u.5   100802774   protein RDM16 
 gma-u.5   100812519   protein RDM16 
 gma-u.5   100797535   protein RDM16 
 sly-u.5   101258563   protein RDM16-like 
 sly-u.5   101255099   protein RDM16 
 vvi-u.5   100248403   protein RDM16 
 ppo-u.5   18108997   protein RDM16 
 ppo-u.5   7489610   protein RDM16 
 mtr-u.5   112421393   protein RDM16 
 mtr-u.5   11428338   protein RDM16 

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Top 50 coexpressed genes to 110434704 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 110434704 (sbi-r.1 coexpression data)

CoexMap"110434704"


sbiLOC110434704 | Entrez gene ID : 110434704    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 3 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (31 genes)  IEA  
GO MF
Protein XP_021315064.1 [sequence] [blastp]
XP_021315065.1 [sequence] [blastp]
XP_021315066.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_021315064.1)
cyto 8,  nucl 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for XP_021315065.1)
cyto 8,  nucl 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for XP_021315066.1)
Subcellular
localization
TargetP
other 9  (predict for XP_021315064.1)
chlo 5,  other 4  (predict for XP_021315065.1)
chlo 5,  other 4  (predict for XP_021315066.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110434704

.
zma-u.5
for
100217215

.
zma-u.5
for
100279564

.
osa-u.5
for
4346506

.
ath-u.5
for
AT1G28060

.
gma-u.5
for
100802774

.
gma-u.5
for
100812519

.
gma-u.5
for
100797535

.
sly-u.5
for
101258563

.
sly-u.5
for
101255099

.
vvi-u.5
for
100248403

.
ppo-u.5
for
18108997

.
ppo-u.5
for
7489610

.
mtr-u.5
for
112421393

.
mtr-u.5
for
11428338

.


Ortholog ID: 4933
Species ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT1G28060 LOC100797535 LOC100802774 LOC101258563 LOC101255099 LOC4346506 LOC100279564 LOC100217215 LOC103838996 LOC100248403 LOC18108997 LOC7489610 LOC112421393 LOC11428338 LOC123087925 LOC123452209 LOC107930725 LOC107941564 LOC106389563 LOC106363204 CHLRE_09g416000v5 LOC110434704 LOC102596525 LOC102596022 LOC102614658 LOC100834120 LOC107792183 LOC107811721
Function* Pre-mRNA-splicing factor 3 protein RDM16 protein RDM16 protein RDM16-like protein RDM16 protein RDM16 Pre-mRNA-splicing factor 3 Pre-mRNA-splicing factor 3 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16 protein RDM16-like uncharacterized protein protein RDM16 U4/U6 small nuclear ribonucleoprotein Prp3-like U4/U6 small nuclear ribonucleoprotein Prp3 protein RDM16 protein RDM16 protein RDM16 protein RDM16-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03015 mRNA surveillance pathway 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03015 mRNA surveillance pathway 4
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839699 100797535 100802774 101258563 101255099 4346506 100279564 100217215 103838996 100248403 18108997 7489610 112421393 11428338 123087925 123452209 107930725 107941564 106389563 106363204 5722376 110434704 102596525 102596022 102614658 100834120 107792183 107811721
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