ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	ROS3	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100778779	protein REPRESSOR OF SILENCING 3
gma-u.5	100808161	protein REPRESSOR OF SILENCING 3
vvi-u.5	104879881	protein REPRESSOR OF SILENCING 3
ppo-u.5	18107900	protein REPRESSOR OF SILENCING 3
mtr-u.5	11422911	protein REPRESSOR OF SILENCING 3
sly-u.5	101264949	protein REPRESSOR OF SILENCING 3-like
sly-u.5	101264344	uncharacterized LOC101264344
osa-u.5	4328244	protein REPRESSOR OF SILENCING 3
zma-u.5	100273064	RNA-binding (RRM/RBD/RNP motifs) family protein

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(3852 genes)

IEA

Protein

XP_048603030.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, extr 2, cyto_nucl 2

(predict for XP_048603030.1)

Subcellular
localization
TargetP

other 8

(predict for XP_048603030.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for ROS3	gma-u.5 for 100778779	gma-u.5 for 100808161	vvi-u.5 for 104879881	ppo-u.5 for 18107900	mtr-u.5 for 11422911	sly-u.5 for 101264949	sly-u.5 for 101264344	osa-u.5 for 4328244	zma-u.5 for 100273064

Ortholog ID: 7002

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

cre

Symbol

ROS3

Function^*

protein REPRESSOR OF SILENCING 3

dentin sialophosphoprotein

RNA-binding (RRM/RBD/RNP motifs) family protein

protein REPRESSOR OF SILENCING 3

protein REPRESSOR OF SILENCING 3-like

uncharacterized LOC102581552

histone-lysine N-methyltransferase SETD1B-like

uncharacterized LOC107785286

uncharacterized LOC107760342

protein REPRESSOR OF SILENCING 3

RNA-binding (RRM/RBD/RNP motifs) family protein

protein REPRESSOR OF SILENCING 3

uncharacterized LOC8062819

uncharacterized LOC100845300

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	3
ghi03013	Nucleocytoplasmic transport	3
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	3
ghi03013	Nucleocytoplasmic transport	3
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

106426062

103845247

835925

121204870

107926250

102607721

100778779

100808161

104879881

18107900

11422911

101264949

102581552

107059321

107785286

107760342

4328244

100273064

123132170

123143708

8062819

100845300

66056358

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to ROS3 (ath-u.5 coexpression data)

Top 50 enrichment test to ROS3 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	1	1	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ROS3 (ath-u.5 coexpression data)

Top 50 enrichment test to ROS3 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**