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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   112272039   pentatricopeptide repeat-containing protein At2g35130 
 tae-r.2   123136656   pentatricopeptide repeat-containing protein At2g35130 
 tae-r.2   123144154   pentatricopeptide repeat-containing protein At2g35130 
 tae-r.2   123132624   phosphatase IMPL1, chloroplastic 
 hvu-r.1   123401411   pentatricopeptide repeat-containing protein At2g35130 
 osa-u.5   4328440   pentatricopeptide repeat-containing protein At2g35130 
 zma-u.5   100277891   Pentatricopeptide repeat-containing protein 
 ath-u.5   AT2G35130   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100800448   pentatricopeptide repeat-containing protein At2g35130 
 sly-u.5   101258029   pentatricopeptide repeat-containing protein At2g35130 
 bra-r.6   103867389   pentatricopeptide repeat-containing protein At2g35130 
 vvi-u.5   100257798   pentatricopeptide repeat-containing protein At2g35130 
 ppo-u.5   7482207   pentatricopeptide repeat-containing protein At2g35130 
 mtr-u.5   25485589   pentatricopeptide repeat-containing protein At2g35130 
 ghi-r.1   107916457   pentatricopeptide repeat-containing protein At2g35130 
 ghi-r.1   107937519   pentatricopeptide repeat-containing protein At2g35130 
 bna-r.1   125575171   pentatricopeptide repeat-containing protein At2g35130-like 
 bna-r.1   106389714   pentatricopeptide repeat-containing protein At2g35130 
 bna-r.1   125600520   pentatricopeptide repeat-containing protein At2g35130-like 
 sot-r.1   102590177   pentatricopeptide repeat-containing protein At2g35130 
 cit-r.1   102610952   pentatricopeptide repeat-containing protein At2g35130 
 nta-r.1   107821147   uncharacterized LOC107821147 
 nta-r.1   107776145   uncharacterized LOC107776145 

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Top 50 coexpressed genes to 112272039 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112272039 (bdi-r.1 coexpression data)

CoexMap"112272039"


bdiLOC112272039 | Entrez gene ID : 112272039    
Species bdi tae hvu osa zma ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre sbi
Paralog 1 3 1 1 1 1 1 1 1 1 1 1 2 3 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_024318329.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_024318329.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_024318329.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
112272039
tae-r.2
for
123136656
tae-r.2
for
123144154
tae-r.2
for
123132624
hvu-r.1
for
123401411
osa-u.5
for
4328440
zma-u.5
for
100277891
ath-u.5
for
AT2G35130
gma-u.5
for
100800448
sly-u.5
for
101258029
bra-r.6
for
103867389
vvi-u.5
for
100257798
ppo-u.5
for
7482207
mtr-u.5
for
25485589
ghi-r.1
for
107916457
ghi-r.1
for
107937519
bna-r.1
for
125575171
bna-r.1
for
106389714
bna-r.1
for
125600520
sot-r.1
for
102590177
cit-r.1
for
102610952
nta-r.1
for
107821147
nta-r.1
for
107776145


Ortholog ID: 11264
Species bdi tae tae tae hvu osa zma ath gma sly bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC112272039 LOC123136656 LOC123144154 LOC123132624 LOC123401411 LOC4328440 LOC100277891 AT2G35130 LOC100800448 LOC101258029 LOC103867389 LOC100257798 LOC7482207 LOC25485589 LOC107916457 LOC107937519 LOC125575171 LOC106389714 LOC125600520 LOC102590177 LOC102610952 LOC107821147 LOC107776145
Function* pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 phosphatase IMPL1, chloroplastic pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 Pentatricopeptide repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130-like pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130-like pentatricopeptide repeat-containing protein At2g35130 pentatricopeptide repeat-containing protein At2g35130 uncharacterized LOC107821147 uncharacterized LOC107776145
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 4
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
ppo00195 Photosynthesis 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112272039 123136656 123144154 123132624 123401411 4328440 100277891 818079 100800448 101258029 103867389 100257798 7482207 25485589 107916457 107937519 125575171 106389714 125600520 102590177 102610952 107821147 107776145
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