ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	112323277	vicilin-like seed storage protein At2g18540
ppo-r.4	112323277	vicilin-like seed storage protein At2g18540
ppo-u.5	7455424	uncharacterized LOC7455424
ppo-u.5	7478896	uncharacterized LOC7478896
gma-u.5	100814323	calponin homology domain-containing protein DDB_G0272472
gma-u.5	100793005	calponin homology domain-containing protein DDB_G0272472
mtr-u.5	112416763	myb-like protein V
mtr-u.5	112421058	uncharacterized LOC112421058
ath-u.5	AT2G47350	HIT zinc finger and PAPA-1-like domain-containing protein
ath-u.5	AT3G06660	PAPA-1-like family protein / zinc finger (HIT type) family protein
ath-u.5	AT1G56460	HIT zinc finger and PAPA-1-like domain-containing protein
bra-r.6	103858242	proline-rich protein 12
bra-r.6	103866388	hepatoma-derived growth factor-related protein 2
bra-r.6	103859174	INO80 complex subunit B
vvi-u.5	100246939	uncharacterized LOC100246939
vvi-u.5	100261960	uncharacterized LOC100261960
ghi-r.1	107938649	uncharacterized LOC107938649
ghi-r.1	107954368	triadin
ghi-r.1	107909999	triadin
bna-r.1	125584364	uncharacterized LOC125584364
bna-r.1	111214157	INO80 complex subunit B-like
bna-r.1	111213905	uncharacterized LOC111213905
cit-r.1	102624196	uncharacterized LOC102624196
cit-r.1	102621326	uncharacterized LOC102621326
cit-r.1	102607806	uncharacterized LOC102607806
sly-u.5	101249962	actin cytoskeleton-regulatory complex protein PAN1
sly-u.5	101265365	uncharacterized LOC101265365
sot-r.1	102597315	uncharacterized LOC102597315
sot-r.1	102579727	uncharacterized LOC102579727
nta-r.1	107809835	uncharacterized LOC107809835
nta-r.1	107806867	uncharacterized LOC107806867
nta-r.1	107799098	uncharacterized LOC107799098
osa-u.5	4334541	uncharacterized LOC4334541
osa-u.5	4352518	serine/arginine repetitive matrix protein 2
zma-u.5	100281422	uncharacterized LOC100281422
zma-u.5	100502463	HIT zinc finger
zma-u.5	100279309	HIT zinc finger
tae-r.2	123102569	eukaryotic translation initiation factor 5B
tae-r.2	123119758	eukaryotic translation initiation factor 5B
tae-r.2	123123411	INO80 complex subunit B
hvu-r.1	123395343	eukaryotic translation initiation factor 5B-like
hvu-r.1	123452937	INO80 complex subunit B-like
sbi-r.1	8057081	uncharacterized LOC8057081
sbi-r.1	8068839	eukaryotic translation initiation factor 5B
bdi-r.1	100827327	cylicin-2
bdi-r.1	100842627	INO80 complex subunit B

Top 50 coexpressed genes to 112323277 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 112323277 (ppo-u.5 coexpression data)

CoexMap"112323277"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006338 [list] [network] chromatin remodeling

(144 genes)

IEA

GO CC

GO:0031011 [list] [network] Ino80 complex

(26 genes)

IEA

GO MF

Protein

XP_024456189.2 [sequence] [blastp]
XP_024456190.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_024456189.2)
nucl 9	(predict for XP_024456190.2)

Subcellular
localization
TargetP

chlo 6	(predict for XP_024456189.2)
chlo 6	(predict for XP_024456190.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 112323277	ppo-r.4 for 112323277	ppo-u.5 for 7455424	ppo-u.5 for 7478896	gma-u.5 for 100814323	gma-u.5 for 100793005	mtr-u.5 for 112416763	mtr-u.5 for 112421058	ath-u.5 for AT2G47350	ath-u.5 for AT3G06660	ath-u.5 for AT1G56460	bra-r.6 for 103858242	bra-r.6 for 103866388	bra-r.6 for 103859174	vvi-u.5 for 100246939	vvi-u.5 for 100261960	ghi-r.1 for 107938649	ghi-r.1 for 107954368	ghi-r.1 for 107909999	bna-r.1 for 125584364	bna-r.1 for 111214157	bna-r.1 for 111213905	cit-r.1 for 102624196	cit-r.1 for 102621326	cit-r.1 for 102607806	sly-u.5 for 101249962	sly-u.5 for 101265365	sot-r.1 for 102597315	sot-r.1 for 102579727	nta-r.1 for 107809835	nta-r.1 for 107806867	nta-r.1 for 107799098	osa-u.5 for 4334541	osa-u.5 for 4352518	zma-u.5 for 100281422	zma-u.5 for 100502463	zma-u.5 for 100279309	tae-r.2 for 123102569	tae-r.2 for 123119758	tae-r.2 for 123123411	hvu-r.1 for 123395343	hvu-r.1 for 123452937	sbi-r.1 for 8057081	sbi-r.1 for 8068839	bdi-r.1 for 100827327	bdi-r.1 for 100842627

Ortholog

Ortholog ID: 1968

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7478896

uncharacterized LOC7460463

uncharacterized LOC7471108

calponin homology domain-containing protein DDB_G0272472

myb-like protein V

uncharacterized LOC112421058

HIT zinc finger and PAPA-1-like domain-containing protein

PAPA-1-like family protein / zinc finger (HIT type) family protein

HIT zinc finger and PAPA-1-like domain-containing protein

proline-rich protein 12

hepatoma-derived growth factor-related protein 2

INO80 complex subunit B

uncharacterized LOC100246939

uncharacterized LOC100261960

uncharacterized LOC107938649

triadin

uncharacterized LOC107886359

INO80 complex subunit B-like

uncharacterized LOC111213905

uncharacterized LOC106390540

uncharacterized LOC102624196

uncharacterized LOC102621326

uncharacterized LOC102607806

actin cytoskeleton-regulatory complex protein PAN1

uncharacterized LOC101265365

uncharacterized LOC102597315

uncharacterized LOC102579727

uncharacterized LOC107809835

uncharacterized LOC107799098

uncharacterized LOC107792467

uncharacterized LOC4334541

serine/arginine repetitive matrix protein 2

uncharacterized LOC100281422

HIT zinc finger

eukaryotic translation initiation factor 5B

INO80 complex subunit B

eukaryotic translation initiation factor 5B

eukaryotic translation initiation factor 5B-like

INO80 complex subunit B-like

uncharacterized LOC8057081

eukaryotic translation initiation factor 5B

cylicin-2

INO80 complex subunit B

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	4
ppo04814	Motor proteins	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2
ghi03420	Nucleotide excision repair	2
ghi00310	Lysine degradation	2
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03450	Non-homologous end-joining	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	2
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03015	mRNA surveillance pathway	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03040	Spliceosome	3
tae03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

Expression

Expression pattern

Entrez Gene ID^*

7478896

7460463

7471108

100814323

100793005

112416763

112421058

819348

819851

842099

103858242

103866388

103849764

100246939

100261960

107938649

107909999

107886359

111214157

111213905

106390540

102624196

102621326

102607806

101249962

101265365

102597315

102579727

107809835

107799098

107792467

4334541

4352518

100281422

100502463

100279309

123102569

123105593

123110757

123395343

123452937

8057081

8068839

100827327

100842627

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	3	2	3	3	3	2	2	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112323277 (ppo-u.5 coexpression data)

Top 50 enrichment test to 112323277 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**