ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	113633883	uncharacterized LOC113633883
zma-r.6	113633883	uncharacterized LOC113633883
zma-u.5	100286035	uncharacterized LOC100286035
zma-u.5	100281783	DNA-directed RNA polymerase II 8.2 kDa polypeptide
osa-u.5	4351671	DNA-directed RNA polymerases I, II, and III subunit RPABC5
osa-u.5	4349985	DNA-directed RNA polymerases I, II, and III subunit RPABC5
ath-u.5	NRPB10	RNA polymerases N / 8 kDa subunit
gma-u.5	100500450	DNA-directed RNA polymerase subunit 10-like protein
gma-u.5	100775415	DNA-directed RNA polymerase subunit 10-like protein
sly-u.5	101251196	DNA-directed RNA polymerases I, II, and III subunit RPABC5
vvi-u.5	100267114	DNA-directed RNA polymerase subunit 10-like protein
ppo-u.5	18100279	DNA-directed RNA polymerases I, II, and III subunit RPABC5
ppo-u.5	7491904	DNA-directed RNA polymerases I, II, and III subunit RPABC5
mtr-u.5	25492856	DNA-directed RNA polymerase subunit 10-like protein
mtr-u.5	11405864	DNA-directed RNA polymerase subunit 10-like protein

Annotation

functional annotation

KEGG

zma03020 [list] [network] RNA polymerase (74 genes)

zma03420 [list] [network] Nucleotide excision repair (94 genes)

GO BP

GO:0042797 [list] [network] tRNA transcription by RNA polymerase III	(12 genes)	IEA
GO:0006360 [list] [network] transcription by RNA polymerase I	(17 genes)	IEA
GO:0006366 [list] [network] transcription by RNA polymerase II	(106 genes)	IEA

GO CC

GO:0005736 [list] [network] RNA polymerase I complex	(14 genes)	IEA
GO:0005665 [list] [network] RNA polymerase II, core complex	(23 genes)	IEA
GO:0005666 [list] [network] RNA polymerase III complex	(28 genes)	IEA

GO MF

GO:0008270 [list] [network] zinc ion binding	(807 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2288 genes)	IEA

Protein

NP_001354282.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto_nucl 2, mito 1, extr 1, chlo 1, plas 1, cysk 1, golg 1, cyto_mito 1, golg_plas 1, cysk_plas 1

(predict for NP_001354282.1)

Subcellular
localization
TargetP

other 6, scret 4

(predict for NP_001354282.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 113633883	zma-r.6 for 113633883	zma-u.5 for 100286035	zma-u.5 for 100281783	osa-u.5 for 4351671	osa-u.5 for 4349985	ath-u.5 for NRPB10	gma-u.5 for 100500450	gma-u.5 for 100775415	sly-u.5 for 101251196	vvi-u.5 for 100267114	ppo-u.5 for 18100279	ppo-u.5 for 7491904	mtr-u.5 for 25492856	mtr-u.5 for 11405864

Ortholog

Ortholog ID: 3857

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

cre

Symbol

NRPB10

Function^*

uncharacterized LOC100286035

uncharacterized LOC113633883

DNA-directed RNA polymerases II, IV and V subunit 10

DNA-directed RNA polymerases I, II, and III subunit RPABC5

RNA polymerases N / 8 kDa subunit

DNA-directed RNA polymerase subunit 10-like protein

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase subunit 10-like protein

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase subunit 10-like protein

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase subunit 10-like protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma03010	Ribosome	3
zma03008	Ribosome biogenesis in eukaryotes	3
zma03018	RNA degradation	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	11
zma03018	RNA degradation	4
zma03008	Ribosome biogenesis in eukaryotes	2
zma03020	RNA polymerase	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	6
sbi03010	Ribosome	4
sbi03420	Nucleotide excision repair	3
sbi03020	RNA polymerase	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa03040	Spliceosome	2
osa00240	Pyrimidine metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03020	RNA polymerase	3
osa03420	Nucleotide excision repair	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	8
tae03420	Nucleotide excision repair	8
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	7
tae03420	Nucleotide excision repair	7
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu03010	Ribosome	3
hvu03020	RNA polymerase	3
hvu03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8
ath03020	RNA polymerase	3
ath03420	Nucleotide excision repair	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3
sly03040	Spliceosome	3
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	4
bra03420	Nucleotide excision repair	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03040	Spliceosome	4
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo03020	RNA polymerase	2
ppo03420	Nucleotide excision repair	2
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr03040	Spliceosome	4
mtr03020	RNA polymerase	3
mtr03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5
bna03020	RNA polymerase	4
bna03420	Nucleotide excision repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03020	RNA polymerase	4
bna03420	Nucleotide excision repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03010	Ribosome	2
sot03018	RNA degradation	2
sot03020	RNA polymerase	2
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit03020	RNA polymerase	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03020	RNA polymerase	5
cre03008	Ribosome biogenesis in eukaryotes	4
cre03420	Nucleotide excision repair	3
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

100286035

113633883

8076306

4349985

4351671

123111008

123102857

123396538

123409349

100828005

100822387

837690

100797078

101251196

103836229

103871905

100267114

18100279

7491904

11405864

107909683

121210970

106366999

106362151

102596451

102624903

5719150

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 113633883 (zma-u.5 coexpression data)

Top 50 enrichment test to 113633883 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	2	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 113633883 (zma-u.5 coexpression data)

Top 50 enrichment test to 113633883 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**