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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11405916   transcription initiation factor IIF subunit alpha 
 mtr-r.5   11405916   transcription initiation factor IIF subunit alpha 
 mtr-u.5   11406415   transcription initiation factor IIF subunit alpha 
 gma-u.5   100813730   transcription initiation factor IIF subunit alpha 
 gma-u.5   100812247   transcription initiation factor IIF subunit alpha 
 ppo-u.5   7453709   transcription initiation factor IIF subunit alpha 
 ppo-u.5   7458490   transcription initiation factor IIF subunit alpha 
 ath-u.5   RAP74   transcription initiation factor IIF subunit alpha RAP74 
 bra-r.6   103839874   transcription initiation factor IIF subunit alpha 
 bra-r.6   103858644   transcription initiation factor IIF subunit alpha 
 vvi-u.5   100253654   transcription initiation factor IIF subunit alpha 
 ghi-r.1   107907951   transcription initiation factor IIF subunit alpha 
 ghi-r.1   107963099   transcription initiation factor IIF subunit alpha 
 bna-r.1   106436280   transcription initiation factor IIF subunit alpha-like 
 bna-r.1   106364104   transcription initiation factor IIF subunit alpha 
 bna-r.1   106381585   transcription initiation factor IIF subunit alpha 
 cit-r.1   102629224   transcription initiation factor IIF subunit alpha 
 sly-u.5   101254156   transcription initiation factor IIF subunit alpha 
 sot-r.1   102599174   transcription initiation factor IIF subunit alpha 
 nta-r.1   107811290   transcription initiation factor IIF subunit alpha 
 nta-r.1   107777849   transcription initiation factor IIF subunit alpha 
 osa-u.5   4348225   transcription initiation factor IIF subunit alpha 
 osa-u.5   9266910   transcription initiation factor IIF subunit alpha 
 zma-u.5   103639350   transcription initiation factor IIF subunit alpha 
 zma-u.5   100282440   uncharacterized LOC100282440 
 tae-r.2   123043989   transcription initiation factor IIF subunit alpha 
 tae-r.2   123092746   transcription initiation factor IIF subunit alpha 
 hvu-r.1   123428937   transcription initiation factor IIF subunit alpha 
 hvu-r.1   123449141   transcription initiation factor IIF subunit alpha-like 
 sbi-r.1   8054334   transcription initiation factor IIF subunit alpha 
 bdi-r.1   100846625   transcription initiation factor IIF subunit alpha 

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Top 50 coexpressed genes to 11405916 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11405916 (mtr-u.5 coexpression data)

CoexMap"11405916"


mtrLOC11405916 | Entrez gene ID : 11405916      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 1 2 1 2 3 1 1 1 2 2 2 2 2 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03022 [list] [network] Basal transcription factors (52 genes)
GO BP
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (23 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (34 genes)  IEA  
GO CC
GO:0005674 [list] [network] transcription factor TFIIF complex  (4 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0001096 [list] [network] TFIIF-class transcription factor complex binding  (2 genes)  IEA  
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (19 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_039686289.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_039686289.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_039686289.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11405916
mtr-r.5
for
11405916
mtr-u.5
for
11406415
gma-u.5
for
100813730
gma-u.5
for
100812247
ppo-u.5
for
7453709
ppo-u.5
for
7458490
ath-u.5
for
RAP74
bra-r.6
for
103839874
bra-r.6
for
103858644
vvi-u.5
for
100253654
ghi-r.1
for
107907951
ghi-r.1
for
107963099
bna-r.1
for
106436280
bna-r.1
for
106364104
bna-r.1
for
106381585
cit-r.1
for
102629224
sly-u.5
for
101254156
sot-r.1
for
102599174
nta-r.1
for
107811290
nta-r.1
for
107777849
osa-u.5
for
4348225
osa-u.5
for
9266910
zma-u.5
for
103639350
zma-u.5
for
100282440
tae-r.2
for
123043989
tae-r.2
for
123092746
hvu-r.1
for
123428937
hvu-r.1
for
123449141
sbi-r.1
for
8054334
bdi-r.1
for
100846625


Ortholog ID: 5791
Species mtr mtr gma gma ppo ppo ath bra bra vvi ghi ghi bna bna bna cit sly sot nta nta osa osa zma zma tae tae hvu hvu sbi bdi
Symbol LOC11405916 LOC11406415 LOC100813730 LOC100812247 LOC7453709 LOC7458490 RAP74 LOC103839874 LOC103858644 LOC100253654 LOC107907951 LOC107963099 LOC106436280 LOC106381585 LOC106438770 LOC102629224 LOC101254156 LOC102599174 LOC107811290 LOC107777849 LOC4348225 LOC9266910 LOC103639350 LOC100282440 LOC123092746 LOC123118340 LOC123428937 LOC123449141 LOC8054334 LOC100846625
Function* transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha RAP74 transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha-like transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha-like transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha uncharacterized LOC100282440 transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha-like transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03022 Basal transcription factors 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03022 Basal transcription factors 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 3
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 4
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04120 Ubiquitin mediated proteolysis 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03015 mRNA surveillance pathway 2
hvu03022 Basal transcription factors 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11405916 11406415 100813730 100812247 7453709 7458490 826874 103839874 103858644 100253654 107907951 107963099 106436280 106381585 106438770 102629224 101254156 102599174 107811290 107777849 4348225 9266910 103639350 100282440 123092746 123118340 123428937 123449141 8054334 100846625
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