ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11414963	thioredoxin H2
mtr-r.5	11414963	thioredoxin H2
mtr-m.5	11414963	thioredoxin H2
mtr-u.5	25490237	thioredoxin H-type
mtr-u.5	11405991	thioredoxin H1
mtr-u.5	11411777	thioredoxin H2
gma-u.5	100527572	uncharacterized LOC100527572
gma-u.5	100499701	uncharacterized LOC100499701
gma-u.5	100306506	uncharacterized LOC100306506
ppo-u.5	7473251	thioredoxin H-type 2
ppo-u.5	7482444	thioredoxin H2
ppo-u.5	7493932	thioredoxin H-type 2
ath-u.5	TRX2	thioredoxin 2
ath-u.5	TRX5	thioredoxin H-type 5
bra-r.6	103860686	thioredoxin H1
vvi-u.5	100266040	thioredoxin H-type
vvi-u.5	100252624	thioredoxin H2
vvi-u.5	100253934	thioredoxin H-type 2
ghi-r.1	107897616	thioredoxin H-type
ghi-r.1	107896797	thioredoxin H-type
ghi-r.1	107903863	thioredoxin H2
bna-r.1	106444352	thioredoxin H1
bna-r.1	106447064	thioredoxin H-type
cit-r.1	102619902	thioredoxin H7
cit-r.1	102624646	thioredoxin H-type
cit-r.1	102616803	thioredoxin H2
sly-u.5	112940024	thioredoxin H4
sly-u.5	101245904	thioredoxin H-type 2
sly-u.5	101248480	thioredoxin H-type 1
sot-r.1	102593604	thioredoxin H2-like
sot-r.1	102599106	thioredoxin H-type 2-like
sot-r.1	102593925	thioredoxin H2-like
nta-r.1	107762104	thioredoxin H-type 1
nta-r.1	107759604	thioredoxin H2
osa-u.5	4342618	thioredoxin H2-1-like
osa-u.5	4342593	thioredoxin H1-like
osa-u.5	4339267	thioredoxin H-type
zma-u.5	100856910	thioredoxin H-type 5
zma-u.5	100856942	uncharacterized LOC100856942
zma-u.5	606487	uncharacterized LOC606487
tae-r.2	542883	thioredoxin H-type-like
tae-r.2	543303	thioredoxin H-type-like
hvu-r.1	123452784	thioredoxin H2-2-like
hvu-r.1	123446754	thioredoxin H-type
hvu-r.1	123426156	thioredoxin H-type-like
sbi-r.1	8056638	thioredoxin H1
sbi-r.1	8061153	thioredoxin H2-2
bdi-r.1	104582621	thioredoxin H-type
bdi-r.1	100841666	thioredoxin H2-2
bdi-r.1	100825953	thioredoxin H1
cre-r.1	CHLRE_05g248500v5	uncharacterized protein
cre-r.1	CHLRE_09g391900v5	uncharacterized protein

Top 50 coexpressed genes to 11414963 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11414963 (mtr-u.5 coexpression data)

CoexMap"11414963"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001409315.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 7, nucl 1, cyto 1, cyto_nucl 1

(predict for NP_001409315.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001409315.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11414963	mtr-r.5 for 11414963	mtr-m.5 for 11414963	mtr-u.5 for 25490237	mtr-u.5 for 11405991	mtr-u.5 for 11411777	gma-u.5 for 100527572	gma-u.5 for 100499701	gma-u.5 for 100306506	ppo-u.5 for 7473251	ppo-u.5 for 7482444	ppo-u.5 for 7493932	ath-u.5 for TRX2	ath-u.5 for TRX5	bra-r.6 for 103860686	vvi-u.5 for 100266040	vvi-u.5 for 100252624	vvi-u.5 for 100253934	ghi-r.1 for 107897616	ghi-r.1 for 107896797	ghi-r.1 for 107903863	bna-r.1 for 106444352	bna-r.1 for 106447064	cit-r.1 for 102619902	cit-r.1 for 102624646	cit-r.1 for 102616803	sly-u.5 for 112940024	sly-u.5 for 101245904	sly-u.5 for 101248480	sot-r.1 for 102593604	sot-r.1 for 102599106	sot-r.1 for 102593925	nta-r.1 for 107762104	nta-r.1 for 107759604	osa-u.5 for 4342618	osa-u.5 for 4342593	osa-u.5 for 4339267	zma-u.5 for 100856910	zma-u.5 for 100856942	zma-u.5 for 606487	tae-r.2 for 542883	tae-r.2 for 543303	hvu-r.1 for 123452784	hvu-r.1 for 123446754	hvu-r.1 for 123426156	sbi-r.1 for 8056638	sbi-r.1 for 8061153	bdi-r.1 for 104582621	bdi-r.1 for 100841666	bdi-r.1 for 100825953	cre-r.1 for CHLRE_05g248500v5	cre-r.1 for CHLRE_09g391900v5

Ortholog

Ortholog ID: 364

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TRX5

TRX3

Function^*

thioredoxin H-type

thioredoxin H2

thioredoxin H-type

uncharacterized LOC100306454

thioredoxin H2

thioredoxin H9

thioredoxin H2

thioredoxin H-type 2

thioredoxin H1

thioredoxin H-type 5

thioredoxin 3

thioredoxin H5

thioredoxin H1

thioredoxin H-type 2

thioredoxin H-type

thioredoxin H-type-like

thioredoxin H2

thioredoxin H-type

thioredoxin H2

thioredoxin H-type

thioredoxin H1

thioredoxin H2

thioredoxin H5

thioredoxin H-type

thioredoxin H2

thioredoxin H1

thioredoxin H2

thioredoxin H2-like

thioredoxin H-type 1

thioredoxin H2-like

thioredoxin H-type 2

thioredoxin H4-1

thioredoxin H-type

thioredoxin H2-1-like

thioredoxin H1-like

thioredoxin H-type

thioredoxin H-type 5

uncharacterized LOC606487

thioredoxin H-type 5

thioredoxin H-type-like

thioredoxin H1

thioredoxin H2-2-like

thioredoxin H-type

thioredoxin H-type-like

thioredoxin H1

thioredoxin H2-2

thioredoxin H1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	4
ath00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	4
ghi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly04120	Ubiquitin mediated proteolysis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly04120	Ubiquitin mediated proteolysis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta03440	Homologous recombination	4
nta00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	8
nta04016	MAPK signaling pathway - plant	4
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	3
osa00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01212	Fatty acid metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	6
hvu04145	Phagosome	3
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	4
sbi04144	Endocytosis	2
sbi00053	Ascorbate and aldarate metabolism	2
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre04141	Protein processing in endoplasmic reticulum	2
cre04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

25490237

11411777

11419222

100306454

100803391

100790322

7482444

7493932

7471930

841082

834313

103854366

103841025

103872775

100266040

100250566

100246832

107897616

107886857

107914284

106444322

106352678

106392101

102624646

102616803

102630430

101253283

101251883

102606377

107062561

107062564

107771931

107823361

107799067

4342618

4342593

4339267

100856910

606487

100303914

543303

123049226

123172441

123452784

123446754

123426156

8056638

8061153

100841666

100825953

100825640

5726320

5720085

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Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	2	1	3	3	2	3	3	3	2	3	3	2	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11414963 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11414963 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**