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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11415119   protein ALWAYS EARLY 3 
 mtr-r.5   11415119   protein ALWAYS EARLY 3 
 mtr-m.5   11415119   protein ALWAYS EARLY 3 
 mtr-u.5   11426420   protein ALWAYS EARLY 2 
 gma-u.5   100781646   protein ALWAYS EARLY 3 
 gma-u.5   100811517   protein ALWAYS EARLY 3 
 ppo-u.5   18098701   rab escort protein 1 
 ppo-u.5   7473283   protein ALWAYS EARLY 2 
 ppo-u.5   7475371   protein ALWAYS EARLY 3 
 ath-u.5   ALY2   ALWAYS EARLY 2 
 ath-u.5   ALY3   DNA binding protein 
 ath-u.5   ALY1   protein ALWAYS EARLY 1 
 vvi-u.5   100266555   protein ALWAYS EARLY 2 
 vvi-u.5   100261468   protein ALWAYS EARLY 3 
 sly-u.5   101265115   protein ALWAYS EARLY 3-like 
 sly-u.5   101249204   protein ALWAYS EARLY 3 
 osa-u.5   9272548   protein ALWAYS EARLY 3 
 zma-u.5   100272535   uncharacterized LOC100272535 

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Top 50 coexpressed genes to 11415119 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11415119 (mtr-u.5 coexpression data)

CoexMap"11415119"


mtrLOC11415119 | Entrez gene ID : 11415119      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 3 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051726 [list] [network] regulation of cell cycle  (99 genes)  IEA  
GO:0022414 [list] [network] reproductive process  (171 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (265 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (425 genes)  IEA  
GO CC
GO:0017053 [list] [network] transcription repressor complex  (5 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (202 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_003609635.2 [sequence] [blastp]
XP_013458246.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_003609635.2)
nucl 6,  chlo 2,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_013458246.1)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for XP_003609635.2)
mito 4,  other 4  (predict for XP_013458246.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11415119

.
mtr-r.5
for
11415119

.
mtr-m.5
for
11415119

.
mtr-u.5
for
11426420

.
gma-u.5
for
100781646

.
gma-u.5
for
100811517

.
ppo-u.5
for
18098701

.
ppo-u.5
for
7473283

.
ppo-u.5
for
7475371

.
ath-u.5
for
ALY2

.
ath-u.5
for
ALY3

.
ath-u.5
for
ALY1

.
vvi-u.5
for
100266555

.
vvi-u.5
for
100261468

.
sly-u.5
for
101265115

.
sly-u.5
for
101249204

.
osa-u.5
for
9272548

.
zma-u.5
for
100272535

.


Ortholog ID: 2550
Species ath ath gma gma sly sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol ALY1 ALY3 LOC100789533 LOC100781646 LOC101249204 LOC101265115 LOC9272548 LOC100272535 LOC103849006 LOC103854663 LOC100266555 LOC100261468 LOC18098701 LOC18101840 LOC11415119 LOC11426420 LOC123110057 LOC123119065 LOC123397619 LOC121214484 LOC121223460 LOC125597701 LOC125600808 CHLRE_13g570150v5 LOC8080794 LOC102604074 LOC102595287 LOC102623041 LOC102627497 LOC100842465 LOC107761272 LOC107808192
Function* protein ALWAYS EARLY 1 DNA binding protein protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 3 uncharacterized LOC100272535 protein ALWAYS EARLY 2 protein ALWAYS EARLY 1 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 rab escort protein 1 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2-like protein ALWAYS EARLY 3-like protein ALWAYS EARLY 2 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 1-like uncharacterized protein protein ALWAYS EARLY 2 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 3
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 8
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00562 Inositol phosphate metabolism 2
cit04136 Autophagy - other 2
cit03420 Nucleotide excision repair 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 5
nta03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832823 821697 100789533 100781646 101249204 101265115 9272548 100272535 103849006 103854663 100266555 100261468 18098701 18101840 11415119 11426420 123110057 123119065 123397619 121214484 121223460 125597701 125600808 66055938 8080794 102604074 102595287 102623041 102627497 100842465 107761272 107808192
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