ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11416661	DNA polymerase epsilon subunit 4
mtr-r.5	11416661	DNA polymerase epsilon subunit 4
mtr-m.5	11416661	DNA polymerase epsilon subunit 4
gma-u.5	100500588	uncharacterized LOC100500588
gma-u.5	100793738	uncharacterized LOC100793738
ppo-u.5	7491140	DNA polymerase II subunit B3-1
ath-u.5	NF-YC10	nuclear factor Y, subunit C10
bra-r.6	103871543	DNA polymerase epsilon subunit 4
bra-r.6	103843421	chromatin accessibility complex protein 1
vvi-u.5	100243337	uncharacterized LOC100243337
ghi-r.1	107954349	DNA polymerase epsilon subunit C
ghi-r.1	107953224	DNA polymerase epsilon subunit C
bna-r.1	106420010	chromatin accessibility complex protein 1
bna-r.1	106413697	chromatin accessibility complex protein 1
bna-r.1	106351207	chromatin accessibility complex protein 1-like
cit-r.1	102609428	DNA polymerase II subunit B3-1
sly-u.5	101265135	uncharacterized LOC101265135
sot-r.1	102597705	ABC transporter F family member 4
nta-r.1	107830190	uncharacterized LOC107830190
nta-r.1	107805027	uncharacterized LOC107805027
osa-u.5	4334810	nuclear pore complex-interacting protein family member B13
zma-u.5	103644329	neurofilament heavy polypeptide
tae-r.2	123123969	muscle M-line assembly protein unc-89
tae-r.2	123114392	nucleolar protein dao-5
tae-r.2	123087546	muscle M-line assembly protein unc-89
hvu-r.1	123395169	neurofilament heavy polypeptide
sbi-r.1	8061399	muscle M-line assembly protein unc-89
bdi-r.1	100822796	histone H1.3
cre-r.1	CHLRE_04g226400v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1635 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2707 genes)

IEA

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(128 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(391 genes)	IEA

Protein

XP_003606405.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_003606405.1)

Subcellular
localization
TargetP

chlo 7, other 5

(predict for XP_003606405.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11416661	mtr-r.5 for 11416661	mtr-m.5 for 11416661	gma-u.5 for 100500588	gma-u.5 for 100793738	ppo-u.5 for 7491140	ath-u.5 for NF-YC10	bra-r.6 for 103871543	bra-r.6 for 103843421	vvi-u.5 for 100243337	ghi-r.1 for 107954349	ghi-r.1 for 107953224	bna-r.1 for 106420010	bna-r.1 for 106413697	bna-r.1 for 106351207	cit-r.1 for 102609428	sly-u.5 for 101265135	sot-r.1 for 102597705	nta-r.1 for 107830190	nta-r.1 for 107805027	osa-u.5 for 4334810	zma-u.5 for 103644329	tae-r.2 for 123123969	tae-r.2 for 123114392	tae-r.2 for 123087546	hvu-r.1 for 123395169	sbi-r.1 for 8061399	bdi-r.1 for 100822796	cre-r.1 for CHLRE_04g226400v5

Ortholog

Ortholog ID: 8223

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NF-YC10

Function^*

DNA polymerase epsilon subunit 4

uncharacterized LOC100500588

uncharacterized LOC100793738

DNA polymerase II subunit B3-1

nuclear factor Y, subunit C10

DNA polymerase epsilon subunit 4

chromatin accessibility complex protein 1

uncharacterized LOC100243337

DNA polymerase epsilon subunit C

chromatin accessibility complex protein 1

chromatin accessibility complex protein 1-like

chromatin accessibility complex protein 1

DNA polymerase II subunit B3-1

uncharacterized LOC101265135

ABC transporter F family member 4

uncharacterized LOC107830190

uncharacterized LOC107805027

nuclear pore complex-interacting protein family member B13

neurofilament heavy polypeptide

muscle M-line assembly protein unc-89

nucleolar protein dao-5

muscle M-line assembly protein unc-89

neurofilament heavy polypeptide

muscle M-line assembly protein unc-89

histone H1.3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	4
bra03082	ATP-dependent chromatin remodeling	3
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi04146	Peroxisome	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi04146	Peroxisome	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4
bna00061	Fatty acid biosynthesis	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	6
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	2
zma03030	DNA replication	2
zma03410	Base excision repair	2
zma03420	Nucleotide excision repair	2
zma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	16
tae03040	Spliceosome	11
tae04144	Endocytosis	11
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	9
tae04144	Endocytosis	5
tae03040	Spliceosome	4
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	16
tae03040	Spliceosome	11
tae04144	Endocytosis	11
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

11416661

100500588

100793738

7491140

837313

103871543

103843421

100243337

107954349

107953224

106420010

106351207

106400048

102609428

101265135

102597705

107830190

107805027

4334810

103644329

123123969

123114392

123087546

123395169

8061399

100822796

5717808

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11416661 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11416661 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	2	1	2	3	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11416661 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11416661 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**