ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11423170	E3 ubiquitin-protein ligase SINAT5
mtr-r.5	11423170	E3 ubiquitin-protein ligase SINAT5
mtr-m.5	11423170	E3 ubiquitin-protein ligase SINAT5
mtr-u.5	11444084	E3 ubiquitin-protein ligase DIS1
mtr-u.5	25500674	E3 ubiquitin-protein ligase SINAT3
mtr-u.5	25499735	E3 ubiquitin-protein ligase SINAT5
gma-u.5	100782764	E3 ubiquitin-protein ligase SINAT3
gma-u.5	100813966	E3 ubiquitin-protein ligase SINAT2-like
gma-u.5	100792687	E3 ubiquitin-protein ligase SINAT3
ppo-u.5	7479519	E3 ubiquitin-protein ligase SINAT2
ppo-u.5	7462783	E3 ubiquitin-protein ligase DIS1
ppo-u.5	7463600	E3 ubiquitin-protein ligase SINAT2
ath-u.5	AT2G41980	Protein with RING/U-box and TRAF-like domain
ath-u.5	SINAT2	uncharacterized protein
ath-u.5	AT3G61790	Protein with RING/U-box and TRAF-like domain
vvi-u.5	100252009	E3 ubiquitin-protein ligase SINAT5
vvi-u.5	100267231	E3 ubiquitin-protein ligase SINAT2
vvi-u.5	100244678	E3 ubiquitin-protein ligase DIS1
sly-u.5	101264159	E3 ubiquitin ligase SINA6
sly-u.5	101260503	E3 ubiquitin-protein ligase DIS1
sly-u.5	SINA4	E3 ubiquitin ligase SINA4
osa-u.5	4327774	E3 ubiquitin-protein ligase SINAT5
osa-u.5	9266295	E3 ubiquitin-protein ligase DIS1-like
osa-u.5	4329066	E3 ubiquitin-protein ligase SINAT5
zma-u.5	100170241	uncharacterized LOC100170241
zma-u.5	100170242	uncharacterized LOC100170242
zma-u.5	100192741	putative seven in absentia domain family protein

Top 50 coexpressed genes to 11423170 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11423170 (mtr-u.5 coexpression data)

CoexMap"11423170"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr04120 [list] [network] Ubiquitin mediated proteolysis (187 genes)

GO BP

GO:0007275 [list] [network] multicellular organism development	(227 genes)	IEA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(368 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4514 genes)

IEA

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity	(196 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(919 genes)	IEA
GO:0005515 [list] [network] protein binding	(5045 genes)	IEA

Protein

XP_003588519.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, cysk 1, nucl_plas 1

(predict for XP_003588519.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003588519.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11423170	mtr-r.5 for 11423170	mtr-m.5 for 11423170	mtr-u.5 for 11444084	mtr-u.5 for 25500674	mtr-u.5 for 25499735	gma-u.5 for 100782764	gma-u.5 for 100813966	gma-u.5 for 100792687	ppo-u.5 for 7479519	ppo-u.5 for 7462783	ppo-u.5 for 7463600	ath-u.5 for AT2G41980	ath-u.5 for SINAT2	ath-u.5 for AT3G61790	vvi-u.5 for 100252009	vvi-u.5 for 100267231	vvi-u.5 for 100244678	sly-u.5 for 101264159	sly-u.5 for 101260503	sly-u.5 for SINA4	osa-u.5 for 4327774	osa-u.5 for 9266295	osa-u.5 for 4329066	zma-u.5 for 100170241	zma-u.5 for 100170242	zma-u.5 for 100192741

Ortholog

Ortholog ID: 342

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase SINAT3-like

E3 ubiquitin-protein ligase SINAT2

Protein with RING/U-box and TRAF-like domain

TRAF-like superfamily protein

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT4

E3 ubiquitin-protein ligase SINAT5

SINA1p

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase DIS1

putative E3 ubiquitin-protein ligase SINAT1

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin ligase SINA3

E3 ubiquitin ligase SINA6

E3 ubiquitin-protein ligase SINAT5-like

E3 ubiquitin-protein ligase SINAT3-like

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

uncharacterized LOC100170241

uncharacterized LOC100170242

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT5-like

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase DIS1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	5
mtr03083	Polycomb repressive complex	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00770	Pantothenate and CoA biosynthesis	2
gma01240	Biosynthesis of cofactors	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00220	Arginine biosynthesis	2
bna00230	Purine metabolism	2
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00280	Valine, leucine and isoleucine degradation	2
bna00640	Propanoate metabolism	2
bna00785	Lipoic acid metabolism	2
bna01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04145	Phagosome	2
sly04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00920	Sulfur metabolism	4
sot01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta00061	Fatty acid biosynthesis	2
nta00280	Valine, leucine and isoleucine degradation	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	2
nta04120	Ubiquitin mediated proteolysis	2
nta00310	Lysine degradation	2
nta00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04814	Motor proteins	2
bdi03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

25500674

25483549

100810573

100500061

7455750

825352

835417

103862812

103867677

100252009

100233084

107916308

107940377

106428173

111215125

102619672

102623798

101246723

101264159

102599941

102602506

107794971

107784733

4338181

4327774

100170241

100170242

123077898

123165457

123428647

123443282

8080816

8058290

100833057

100832893

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Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11423170 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11423170 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**