ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11427758	uncharacterized LOC11427758
mtr-r.5	11427758	uncharacterized LOC11427758
mtr-m.5	11427758	uncharacterized LOC11427758
mtr-u.5	11446862	uncharacterized LOC11446862
mtr-u.5	11432594	E3 ubiquitin-protein ligase MARCHF8
gma-u.5	100779396	E3 ubiquitin-protein ligase MARCHF7
gma-u.5	100811800	uncharacterized LOC100811800
gma-u.5	100527094	uncharacterized LOC100527094
ppo-u.5	18102274	uncharacterized LOC18102274
ppo-u.5	7455873	uncharacterized LOC7455873
ppo-u.5	7491134	uncharacterized LOC7491134
ath-u.5	AT3G06330	RING/U-box superfamily protein
ath-u.5	AT3G09760	RING/U-box superfamily protein
ath-u.5	AT5G03180	RING/U-box superfamily protein
bra-r.6	103845473	uncharacterized LOC103845473
bra-r.6	108870098	probable E3 ubiquitin-protein ligase MARCH10
vvi-u.5	100257089	uncharacterized LOC100257089
vvi-u.5	100265508	uncharacterized LOC100265508
vvi-u.5	100259554	uncharacterized LOC100259554
ghi-r.1	107959039	E3 ubiquitin-protein ligase MARCHF7
ghi-r.1	107888472	uncharacterized LOC107888472
ghi-r.1	107944690	uncharacterized LOC107944690
bna-r.1	125606989	probable E3 ubiquitin-protein ligase MARCHF10
bna-r.1	125609118	uncharacterized LOC125609118
cit-r.1	102606695	uncharacterized LOC102606695
cit-r.1	102619257	uncharacterized LOC102619257
cit-r.1	102628742	hypothetical protein
sly-u.5	101249383	uncharacterized LOC101249383
sly-u.5	101256453	uncharacterized LOC101256453
sly-u.5	101264251	uncharacterized LOC101264251
sot-r.1	102578157	uncharacterized LOC102578157
sot-r.1	102596732	uncharacterized LOC102596732
sot-r.1	102592492	uncharacterized LOC102592492
nta-r.1	107778310	uncharacterized LOC107778310
nta-r.1	107791000	uncharacterized LOC107791000
nta-r.1	107778950	uncharacterized LOC107778950
osa-u.5	4341836	uncharacterized LOC4341836
osa-u.5	4328407	uncharacterized LOC4328407
osa-u.5	4334905	uncharacterized LOC4334905
zma-u.5	100281740	protein binding protein
zma-u.5	100304255	RING/U-box superfamily protein
zma-u.5	103627315	RING/U-box superfamily protein
tae-r.2	123142905	uncharacterized LOC123142905
tae-r.2	123145033	uncharacterized LOC123145033
hvu-r.1	123424414	uncharacterized LOC123424414
hvu-r.1	123403931	uncharacterized LOC123403931
hvu-r.1	123409809	uncharacterized LOC123409809
sbi-r.1	8056949	uncharacterized LOC8056949
sbi-r.1	8061609	uncharacterized LOC8061609
sbi-r.1	8066464	uncharacterized LOC8066464
bdi-r.1	100829821	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
bdi-r.1	100836924	uncharacterized LOC100836924
bdi-r.1	100839069	uncharacterized LOC100839069
cre-r.1	CHLRE_02g102600v5	uncharacterized protein

Top 50 coexpressed genes to 11427758 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11427758 (mtr-u.5 coexpression data)

CoexMap"11427758"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(919 genes)

IEA

Protein

XP_003597225.2 [sequence] [blastp]
XP_013465290.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, plas 2, golg_plas 1, chlo 1, cyto 1, E.R. 1, cysk 1, chlo_mito 1, cyto_pero 1	(predict for XP_003597225.2)
nucl 3, plas 2, golg_plas 1, chlo 1, cyto 1, E.R. 1, cysk 1, chlo_mito 1, cyto_pero 1	(predict for XP_013465290.1)

Subcellular
localization
TargetP

chlo 5, other 3	(predict for XP_003597225.2)
chlo 5, other 3	(predict for XP_013465290.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11427758	mtr-r.5 for 11427758	mtr-m.5 for 11427758	mtr-u.5 for 11446862	mtr-u.5 for 11432594	gma-u.5 for 100779396	gma-u.5 for 100811800	gma-u.5 for 100527094	ppo-u.5 for 18102274	ppo-u.5 for 7455873	ppo-u.5 for 7491134	ath-u.5 for AT3G06330	ath-u.5 for AT3G09760	ath-u.5 for AT5G03180	bra-r.6 for 103845473	bra-r.6 for 108870098	vvi-u.5 for 100257089	vvi-u.5 for 100265508	vvi-u.5 for 100259554	ghi-r.1 for 107959039	ghi-r.1 for 107888472	ghi-r.1 for 107944690	bna-r.1 for 125606989	bna-r.1 for 125609118	cit-r.1 for 102606695	cit-r.1 for 102619257	cit-r.1 for 102628742	sly-u.5 for 101249383	sly-u.5 for 101256453	sly-u.5 for 101264251	sot-r.1 for 102578157	sot-r.1 for 102596732	sot-r.1 for 102592492	nta-r.1 for 107778310	nta-r.1 for 107791000	nta-r.1 for 107778950	osa-u.5 for 4341836	osa-u.5 for 4328407	osa-u.5 for 4334905	zma-u.5 for 100281740	zma-u.5 for 100304255	zma-u.5 for 103627315	tae-r.2 for 123142905	tae-r.2 for 123145033	hvu-r.1 for 123424414	hvu-r.1 for 123403931	hvu-r.1 for 123409809	sbi-r.1 for 8056949	sbi-r.1 for 8061609	sbi-r.1 for 8066464	bdi-r.1 for 100829821	bdi-r.1 for 100836924	bdi-r.1 for 100839069	cre-r.1 for CHLRE_02g102600v5

Ortholog

Ortholog ID: 514

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC11446862

E3 ubiquitin-protein ligase MARCHF8

E3 ubiquitin-protein ligase MARCHF7

uncharacterized LOC100782610

E3 ubiquitin-protein ligase MARCHF11

uncharacterized LOC100798208

uncharacterized LOC18102274

uncharacterized LOC7455873

uncharacterized LOC7491134

RING/U-box superfamily protein

uncharacterized LOC103870523

uncharacterized LOC103849984

uncharacterized LOC100257089

uncharacterized LOC100265508

uncharacterized LOC100243829

uncharacterized LOC107888472

uncharacterized LOC107944465

uncharacterized LOC107905294

uncharacterized BNAC02G03310D

uncharacterized LOC102606695

uncharacterized LOC102619257

hypothetical protein

uncharacterized LOC101249383

uncharacterized LOC101256453

uncharacterized LOC101265737

uncharacterized LOC102596732

uncharacterized LOC102592492

uncharacterized LOC102593861

uncharacterized LOC107778310

uncharacterized LOC107776383

uncharacterized LOC107783518

uncharacterized LOC4341836

uncharacterized LOC4334905

uncharacterized LOC9266525

protein binding protein

RING/U-box superfamily protein

uncharacterized LOC123149080

uncharacterized LOC123167294

uncharacterized LOC123424414

uncharacterized LOC123403931

uncharacterized LOC123409809

uncharacterized LOC8056949

uncharacterized LOC8061609

uncharacterized LOC8066464

ferredoxin-thioredoxin reductase catalytic chain, chloroplastic

uncharacterized LOC100836924

uncharacterized LOC100839069

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	4
gma01200	Carbon metabolism	4
gma00941	Flavonoid biosynthesis	3
gma04712	Circadian rhythm - plant	3
gma00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00330	Arginine and proline metabolism	3
vvi01200	Carbon metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00260	Glycine, serine and threonine metabolism	4
ghi00460	Cyanoamino acid metabolism	4
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00904	Diterpenoid biosynthesis	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00062	Fatty acid elongation	4
sly04626	Plant-pathogen interaction	4
sly04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04136	Autophagy - other	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae00330	Arginine and proline metabolism	3
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	4
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00561	Glycerolipid metabolism	2
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	2
bdi01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

11446862

11432594

11407485

100782610

100783117

100798208

18102274

7455873

7491134

819807

831897

836179

103870523

103849984

100257089

100265508

100243829

107888472

107944465

107905294

106360582

102606695

102619257

102628742

101249383

101256453

101265737

102596732

102592492

102593861

107778310

107776383

107783518

4341836

4334905

9266525

100281740

100304255

103627315

123149080

123167294

123424414

123403931

123409809

8056949

8061609

8066464

100829821

100836924

100839069

5725554

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	2	3	3	2	3	3	3	3	3	3	2	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11427758 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11427758 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**