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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11429623   DNA topoisomerase 1 
 mtr-r.5   11429623   DNA topoisomerase 1 
 mtr-u.5   25481862   DNA topoisomerase 1 
 gma-u.5   100778913   DNA topoisomerase 1 
 gma-u.5   100788049   DNA topoisomerase 1 
 ppo-u.5   18100798   uncharacterized LOC18100798 
 ath-u.5   AT4G31210   DNA topoisomerase, type IA, core 
 vvi-u.5   100247441   uncharacterized LOC100247441 
 sly-u.5   101248941   uncharacterized LOC101248941 
 osa-u.5   9271035   uncharacterized LOC9271035 
 osa-u.5   4329352   uncharacterized LOC4329352 
 zma-u.5   103631377   DNA topoisomerase 1 
 zma-u.5   103638270   DNA topoisomerase 1 

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Top 50 coexpressed genes to 11429623 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11429623 (mtr-u.5 coexpression data)

CoexMap"11429623"


mtrLOC11429623 | Entrez gene ID : 11429623      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006265 [list] [network] DNA topological change  (18 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (402 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (10 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_039687752.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for XP_039687752.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_039687752.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11429623

.
mtr-r.5
for
11429623

.
mtr-u.5
for
25481862

.
gma-u.5
for
100778913

.
gma-u.5
for
100788049

.
ppo-u.5
for
18100798

.
ath-u.5
for
AT4G31210

.
vvi-u.5
for
100247441

.
sly-u.5
for
101248941

.
osa-u.5
for
9271035

.
osa-u.5
for
4329352

.
zma-u.5
for
103631377

.
zma-u.5
for
103638270

.


Ortholog ID: 6628
Species ath gma gma sly osa osa zma zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G31210 LOC100788049 LOC100778913 LOC101248941 LOC4329352 LOC9271035 LOC103631377 LOC103638270 LOC103862037 LOC103851997 LOC100247441 LOC18100798 LOC25481862 LOC11429623 LOC123169037 LOC123150139 LOC123413672 LOC107962151 LOC107902034 LOC106411523 LOC106454289 CHLRE_10g442850v5 LOC8070880 LOC102606386 LOC102624144 LOC100832827 LOC107814336 LOC107824884
Function* DNA topoisomerase, type IA, core DNA topoisomerase 1 DNA topoisomerase 1 uncharacterized LOC101248941 uncharacterized LOC4329352 uncharacterized LOC9271035 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 uncharacterized LOC100247441 uncharacterized LOC18100798 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1 DNA topoisomerase 1-like DNA topoisomerase 1-like uncharacterized protein DNA topoisomerase 1 DNA topoisomerase 1-like uncharacterized LOC102624144 DNA topoisomerase 1 uncharacterized LOC107814336 uncharacterized LOC107824884
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
bna04626 Plant-pathogen interaction 3
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829248 100788049 100778913 101248941 4329352 9271035 103631377 103638270 103862037 103851997 100247441 18100798 25481862 11429623 123169037 123150139 123413672 107962151 107902034 106411523 106454289 5716040 8070880 102606386 102624144 100832827 107814336 107824884
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