ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100815020	B3 domain-containing transcription factor VRN1
gma-u.5	100819782	B3 domain-containing transcription factor VRN1
ath-u.5	AT3G18960	AP2/B3-like transcriptional factor family protein
ath-u.5	VRN1	AP2/B3-like transcriptional factor family protein
ath-u.5	AT4G01580	AP2/B3-like transcriptional factor family protein
sly-u.5	101263629	B3 domain-containing protein At4g01580-like

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2104 genes)

IEA

Protein

XP_003600453.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, plas 1, cysk 1, cysk_plas 1

(predict for XP_003600453.1)

Subcellular
localization
TargetP

scret 5, other 3

(predict for XP_003600453.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100815020 .	gma-u.5 for 100819782 .	ath-u.5 for AT3G18960 .	ath-u.5 for VRN1 .	ath-u.5 for AT4G01580 .	sly-u.5 for 101263629 .

Ortholog ID: 406

Species

ath

gma

sly

bra

vvi

bna

sot

cit

nta

Symbol

RTV1

Function^*

AP2/B3-like transcriptional factor family protein

uncharacterized protein

B3 domain-containing transcription factor VRN1

B3 domain-containing protein At4g01580-like

B3 domain-containing transcription factor VRN1

B3 domain-containing protein At3g18960

cytochrome P450 82C4-like

B3 domain-containing protein At3g18960

B3 domain-containing transcription factor VRN1

B3 domain-containing transcription factor VRN1-like

B3 domain-containing transcription factor VRN1

B3 domain-containing protein At1g49475-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	3
ath04075	Plant hormone signal transduction	3
ath00640	Propanoate metabolism	2
ath01230	Biosynthesis of amino acids	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2
gma03015	mRNA surveillance pathway	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	4
bra00061	Fatty acid biosynthesis	4
bra01212	Fatty acid metabolism	4
bra00780	Biotin metabolism	3
bra00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot00010	Glycolysis / Gluconeogenesis	2
sot00051	Fructose and mannose metabolism	2
sot00562	Inositol phosphate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

Expression

Expression pattern

Entrez Gene ID^*

841371

841372

100806715

101263629

103869503

103869505

100265476

106446858

106446859

102595417

102626309

107828317

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100815020 (gma-u.5 coexpression data)

Top 50 enrichment test to 100815020 (gma-u.5 coexpression data)


Species	gma	ath	sly	osa	zma	bna	ghi	sbi	nta	mtr	cre	bra	cit	vvi	ppo	hvu	bdi	sot	tae
Paralog	2	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100815020 (gma-u.5 coexpression data)

Top 50 enrichment test to 100815020 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**