ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11446673	probable sucrose-phosphate synthase
mtr-r.5	11446673	probable sucrose-phosphate synthase
mtr-m.5	11446673	probable sucrose-phosphate synthase
mtr-u.5	11405889	probable sucrose-phosphate synthase 2
mtr-u.5	11436613	probable sucrose-phosphate synthase 2
gma-u.5	100807527	probable sucrose-phosphate synthase 3
gma-u.5	100798787	probable sucrose-phosphate synthase
gma-u.5	100806543	probable sucrose-phosphate synthase 3
ppo-u.5	7461652	probable sucrose-phosphate synthase 3
ppo-u.5	7458381	probable sucrose-phosphate synthase 1
ppo-u.5	7477753	sucrose-phosphate synthase 4
ath-u.5	SPS2F	sucrose phosphate synthase 2F
ath-u.5	SPS3F	sucrose phosphate synthase 3F
ath-u.5	SPS1F	sucrose phosphate synthase 1F
vvi-u.5	100244135	probable sucrose-phosphate synthase 1
vvi-u.5	100262385	probable sucrose-phosphate synthase 3
vvi-u.5	100232974	sucrose-phosphate synthase 1
sly-u.5	sps	sucrose-phosphate synthase
sly-u.5	101055573	sucrose-phosphate synthase B
sly-u.5	101055611	sucrose-phosphate synthase A2
osa-u.5	4345220	probable sucrose-phosphate synthase 4
osa-u.5	107281310	probable sucrose-phosphate synthase 5
osa-u.5	4350151	probable sucrose-phosphate synthase 5
zma-u.5	100384028	uncharacterized LOC100384028
zma-u.5	100384650	uncharacterized LOC100384650
zma-u.5	100501516	probable sucrose-phosphate synthase 5

Top 50 coexpressed genes to 11446673 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11446673 (mtr-u.5 coexpression data)

CoexMap"11446673"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr00500 [list] [network] Starch and sucrose metabolism (181 genes)

GO BP

GO:0005985 [list] [network] sucrose metabolic process

(26 genes)

IEA

GO CC

GO MF

GO:0046524 [list] [network] sucrose-phosphate synthase activity

(3 genes)

IEA

Protein

XP_003609431.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, chlo 1

(predict for XP_003609431.1)

Subcellular
localization
TargetP

other 7

(predict for XP_003609431.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11446673	mtr-r.5 for 11446673	mtr-m.5 for 11446673	mtr-u.5 for 11405889	mtr-u.5 for 11436613	gma-u.5 for 100807527	gma-u.5 for 100798787	gma-u.5 for 100806543	ppo-u.5 for 7461652	ppo-u.5 for 7458381	ppo-u.5 for 7477753	ath-u.5 for SPS2F	ath-u.5 for SPS3F	ath-u.5 for SPS1F	vvi-u.5 for 100244135	vvi-u.5 for 100262385	vvi-u.5 for 100232974	sly-u.5 for sps	sly-u.5 for 101055573	sly-u.5 for 101055611	osa-u.5 for 4345220	osa-u.5 for 107281310	osa-u.5 for 4350151	zma-u.5 for 100384028	zma-u.5 for 100384650	zma-u.5 for 100501516

Ortholog

Ortholog ID: 681

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPS2F

SPS1F

sps

Function^*

probable sucrose-phosphate synthase 2

probable sucrose-phosphate synthase

probable sucrose-phosphate synthase 4

probable sucrose-phosphate synthase 3

probable sucrose-phosphate synthase 1

sucrose phosphate synthase 2F

sucrose phosphate synthase 1F

probable sucrose-phosphate synthase 4

probable sucrose-phosphate synthase 2

sucrose-phosphate synthase 1

probable sucrose-phosphate synthase 1

probable sucrose-phosphate synthase 4

probable sucrose-phosphate synthase 1

probable sucrose-phosphate synthase 2

sucrose-phosphate synthase 1

probable sucrose-phosphate synthase 1

sucrose-phosphate synthase

sucrose-phosphate synthase B

probable sucrose-phosphate synthase 4

putative sucrose-phosphate synthase 2

sucrose-phosphate synthase 4

probable sucrose-phosphate synthase 1

probable sucrose-phosphate synthase 2

probable sucrose-phosphate synthase 5

uncharacterized LOC100384028

probable sucrose-phosphate synthase 4

probable sucrose-phosphate synthase 2

probable sucrose-phosphate synthase 5

probable sucrose-phosphate synthase 3

probable sucrose-phosphate synthase 2

probable sucrose-phosphate synthase 4

sucrose-phosphate synthase

probable sucrose-phosphate synthase 5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00250	Alanine, aspartate and glutamate metabolism	3
mtr00460	Cyanoamino acid metabolism	2
mtr00270	Cysteine and methionine metabolism	2
mtr01200	Carbon metabolism	2
mtr01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00906	Carotenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2
gma00740	Riboflavin metabolism	2
gma04142	Lysosome	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	9
ath00630	Glyoxylate and dicarboxylate metabolism	3
ath01200	Carbon metabolism	3
ath01210	2-Oxocarboxylic acid metabolism	3
ath01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra01200	Carbon metabolism	5
bra00260	Glycine, serine and threonine metabolism	4
bra04146	Peroxisome	3
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04075	Plant hormone signal transduction	4
ghi00562	Inositol phosphate metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00052	Galactose metabolism	3
bna00561	Glycerolipid metabolism	3
bna00600	Sphingolipid metabolism	3
bna00603	Glycosphingolipid biosynthesis - globo and isoglobo series	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	4
bna04070	Phosphatidylinositol signaling system	4
bna00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	10
cit03040	Spliceosome	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	7
sly00010	Glycolysis / Gluconeogenesis	2
sly00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2
osa04141	Protein processing in endoplasmic reticulum	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	2
tae00770	Pantothenate and CoA biosynthesis	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	3
bdi01200	Carbon metabolism	3
bdi04146	Peroxisome	3
bdi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	5
bdi01230	Biosynthesis of amino acids	3
bdi00906	Carotenoid biosynthesis	2
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

11405889

11436613

100798787

100786531

7461652

7458381

830979

832150

103853568

103855902

100232974

100241955

107959558

121225232

106366768

106439492

102618138

102630462

543516

101055573

102604080

107780355

107789345

4324364

4328527

100501516

100384028

123172359

123136523

123447849

123413108

8079417

8074599

100844859

100828234

5722527

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Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11446673 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11446673 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**