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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   rpoA   RNA polymerase alpha subunit 
 bna-r.1   125598836   DNA-directed RNA polymerase subunit alpha 
 bna-r.1   125599521   DNA-directed RNA polymerase subunit alpha 
 ath-u.5   rpoA   RNA polymerase alpha subunit 
 ghi-r.1   121213906   DNA-directed RNA polymerase subunit alpha-like 
 ghi-r.1   121210820   DNA-directed RNA polymerase subunit alpha 
 ghi-r.1   121227131   DNA-directed RNA polymerase subunit alpha 
 cit-r.1   rpoA   RNA polymerase alpha subunit 
 gma-u.5   rpoA   RNA polymerase alpha chain 
 vvi-u.5   rpoA   RNA polymerase alpha chain 
 ppo-u.5   rpoA   RNA polymerase alpha subunit 
 mtr-u.5   120580176   DNA-directed RNA polymerase subunit alpha 
 mtr-u.5   rpoA   RNA polymerase alpha subunit 
 sly-u.5   rpoA   RNA polymerase alpha subunit 
 sot-r.1   rpoA   RNA polymerase alpha subunit 
 nta-r.1   rpoA   RNA polymerase alpha chain 
 osa-u.5   rpoA   RNA polymerase alpha subunit 
 zma-u.5   118472117   DNA-directed RNA polymerase subunit alpha 
 zma-u.5   rpoA   RNA polymerase alpha subunit 
 sbi-r.1   rpoA   RNA polymerase alpha subunit 
 bdi-r.1   rpoA   RNA polymerase alpha subunit 

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Top 50 coexpressed genes to rpoA (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rpoA (bna-r.1 coexpression data)

CoexMap"11542055"


bnarpoA | Entrez gene ID : 11542055    
Species bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma sbi bdi bra cre tae hvu
Paralog 3 1 3 1 1 1 1 2 1 1 1 1 2 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
GO BP
GO CC
GO MF
Protein YP_005089984.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 1,  plas 1,  mito_plas 1  (predict for YP_005089984.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for YP_005089984.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
rpoA
bna-r.1
for
125598836
bna-r.1
for
125599521
ath-u.5
for
rpoA
ghi-r.1
for
121213906
ghi-r.1
for
121210820
ghi-r.1
for
121227131
cit-r.1
for
rpoA
gma-u.5
for
rpoA
vvi-u.5
for
rpoA
ppo-u.5
for
rpoA
mtr-u.5
for
120580176
mtr-u.5
for
rpoA
sly-u.5
for
rpoA
sot-r.1
for
rpoA
nta-r.1
for
rpoA
osa-u.5
for
rpoA
zma-u.5
for
118472117
zma-u.5
for
rpoA
sbi-r.1
for
rpoA
bdi-r.1
for
rpoA


Ortholog ID: 8324
Species bna bna bna ath ghi ghi ghi cit gma vvi ppo mtr mtr sly sot nta osa zma zma sbi bdi
Symbol rpoA LOC125598836 LOC125599521 rpoA LOC121227131 LOC121214785 rpoA rpoA rpoA rpoA rpoA LOC120580176 rpoA rpoA rpoA rpoA rpoA LOC118472117 rpoA rpoA rpoA
Function* RNA polymerase alpha subunit DNA-directed RNA polymerase subunit alpha DNA-directed RNA polymerase subunit alpha RNA polymerase alpha subunit DNA-directed RNA polymerase subunit alpha DNA-directed RNA polymerase subunit alpha-like RNA polymerase alpha chain RNA polymerase alpha subunit RNA polymerase alpha chain RNA polymerase alpha chain RNA polymerase alpha subunit DNA-directed RNA polymerase subunit alpha RNA polymerase alpha subunit RNA polymerase alpha subunit RNA polymerase alpha subunit RNA polymerase alpha chain RNA polymerase alpha subunit DNA-directed RNA polymerase subunit alpha RNA polymerase alpha subunit RNA polymerase alpha subunit RNA polymerase alpha subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 10
ghi01200 Carbon metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit00970 Aminoacyl-tRNA biosynthesis 5
cit00190 Oxidative phosphorylation 3
cit00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00970 Aminoacyl-tRNA biosynthesis 4
gma03020 RNA polymerase 4
gma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03020 RNA polymerase 4
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00195 Photosynthesis 5
mtr03020 RNA polymerase 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00195 Photosynthesis 5
mtr03020 RNA polymerase 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly00190 Oxidative phosphorylation 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
sot00190 Oxidative phosphorylation 3
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta00190 Oxidative phosphorylation 5
nta00195 Photosynthesis 4
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 11
zma03010 Ribosome 4
zma00190 Oxidative phosphorylation 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
zma00195 Photosynthesis 4
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 8
sbi00195 Photosynthesis 6
sbi03010 Ribosome 6
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11542055 125598836 125599521 844727 121227131 121214785 3989136 4271184 3989329 4025131 4929705 120580176 5333122 3950412 4099876 800443 3131431 118472117 845224 4549223 6439777
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