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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   118475934   photosystem II D2 protein 
 zma-r.6   118475934   photosystem II D2 protein 
 zma-u.5   118475437   photosystem II D2 protein 
 zma-u.5   psbD   photosystem II protein D2 
 sbi-r.1   psbD   photosystem II protein D2 
 osa-u.5   psbD   photosystem II protein D2 
 tae-r.2   123067330   photosystem II D2 protein-like 
 tae-r.2   123057019   photosystem II D2 protein-like 
 tae-r.2   123056199   photosystem II D2 protein 
 hvu-r.1   123422267   photosystem II D2 protein 
 hvu-r.1   123420218   photosystem II D2 protein 
 hvu-r.1   123420872   photosystem II D2 protein 
 bdi-r.1   psbD   photosystem II protein D2 
 ath-u.5   psbD   photosystem II protein D2 
 gma-u.5   psbD   photosystem II protein D2 
 sly-u.5   psbD   photosystem II protein D2 
 bra-r.6   117126101   photosystem II D2 protein 
 vvi-u.5   psbD   photosystem II protein D2 
 ppo-u.5   psbD   photosystem II protein D2 
 mtr-u.5   psbD   photosystem II protein D2 
 ghi-r.1   psbD   photosystem II protein D2 
 ghi-r.1   121213538   photosystem II D2 protein 
 bna-r.1   125601655   photosystem II D2 protein 
 bna-r.1   125593470   photosystem II D2 protein-like 
 bna-r.1   125601866   photosystem II D2 protein-like 
 sot-r.1   psbD   photosystem II protein D2 
 cit-r.1   psbD   photosystem II protein D2 
 nta-r.1   psbD   photosystem II protein D2 

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Top 50 coexpressed genes to 118475934 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 118475934 (zma-u.5 coexpression data)

CoexMap"118475934"


zmaLOC118475934 | Entrez gene ID : 118475934    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 1 1 3 3 1 1 1 1 1 1 1 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00195 [list] [network] Photosynthesis (146 genes)
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (10 genes)  IEA  
GO:0019684 [list] [network] photosynthesis, light reaction  (74 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (149 genes)  IEA  
GO CC
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (153 genes)  IEA  
GO MF
Protein XP_035819884.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  plas 2,  pero 2,  cyto_E.R. 2  (predict for XP_035819884.1)
Subcellular
localization
TargetP
other 9  (predict for XP_035819884.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
118475934
zma-r.6
for
118475934
zma-u.5
for
118475437
zma-u.5
for
psbD
sbi-r.1
for
psbD
osa-u.5
for
psbD
tae-r.2
for
123067330
tae-r.2
for
123057019
tae-r.2
for
123056199
hvu-r.1
for
123422267
hvu-r.1
for
123420218
hvu-r.1
for
123420872
bdi-r.1
for
psbD
ath-u.5
for
psbD
gma-u.5
for
psbD
sly-u.5
for
psbD
bra-r.6
for
117126101
vvi-u.5
for
psbD
ppo-u.5
for
psbD
mtr-u.5
for
psbD
ghi-r.1
for
psbD
ghi-r.1
for
121213538
bna-r.1
for
125601655
bna-r.1
for
125593470
bna-r.1
for
125601866
sot-r.1
for
psbD
cit-r.1
for
psbD
nta-r.1
for
psbD


Ortholog ID: 1774
Species zma zma zma sbi osa tae tae hvu hvu hvu bdi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta
Symbol LOC118475934 LOC118475437 psbD psbD psbD LOC123056199 LOC123051035 LOC123421985 LOC123419405 LOC123418889 psbD psbD psbD psbD LOC117126101 psbD psbD psbD psbD LOC121213538 LOC125606695 psbD psbD psbD psbD
Function* photosystem II D2 protein photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II D2 protein photosystem II D2 protein-like photosystem II D2 protein photosystem II D2 protein photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II D2 protein photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 14
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 11
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 15
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi03010 Ribosome 8
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 13
osa03010 Ribosome 5
osa00190 Oxidative phosphorylation 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 11
tae00190 Oxidative phosphorylation 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 6
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 15
gma00190 Oxidative phosphorylation 4
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 13
sly00970 Aminoacyl-tRNA biosynthesis 2
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi03010 Ribosome 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 14
ppo00190 Oxidative phosphorylation 4
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03010 Ribosome 5
mtr00190 Oxidative phosphorylation 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 12
nta00190 Oxidative phosphorylation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 118475934 118475437 845202 4549103 3131412 123056199 123051035 123421985 123419405 123418889 6439844 844775 3989284 3950483 117126101 4025083 4929654 5333170 3989205 121213538 125606695 11542039 4099961 4271200 800525
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