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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   120576130   30S ribosomal protein S4, chloroplastic 
 mtr-r.5   120576130   30S ribosomal protein S4, chloroplastic 
 mtr-u.5   120576132   30S ribosomal protein S4, chloroplastic 
 mtr-u.5   rps4   ribosomal protein S4 
 mtr-u.5   120576897   30S ribosomal protein S4, chloroplastic 
 gma-u.5   rps4   ribosomal protein S4 
 ppo-u.5   rps4   ribosomal protein S4 
 ath-u.5   rps4   ribosomal protein S4 
 vvi-u.5   rps4   ribosomal protein S4 
 ghi-r.1   rps4   ribosomal protein S4 
 cit-r.1   rps4   ribosomal protein S4 
 sly-u.5   rps4   ribosomal protein S4 
 sot-r.1   rps4   ribosomal protein S4 
 nta-r.1   rps4   ribosomal protein S4 
 osa-u.5   rps4   ribosomal protein S4 
 zma-u.5   rps4   ribosomal protein S4 
 sbi-r.1   rps4   ribosomal protein S4 
 bdi-r.1   rps4   ribosomal protein S4 

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Top 50 coexpressed genes to 120576130 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 120576130 (mtr-u.5 coexpression data)

CoexMap"120576130"


mtrLOC120576130 | Entrez gene ID : 120576130    
Species mtr gma ppo ath vvi ghi cit sly sot nta osa zma sbi bdi cre bra hvu bna tae
Paralog 5 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03010 [list] [network] Ribosome (1813 genes)
GO BP
GO:0042274 [list] [network] ribosomal small subunit biogenesis  (79 genes)  IEA  
GO:0006412 [list] [network] translation  (552 genes)  IEA  
GO CC
GO:0015935 [list] [network] small ribosomal subunit  (88 genes)  IEA  
GO MF
GO:0019843 [list] [network] rRNA binding  (86 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (369 genes)  IEA  
Protein XP_039683071.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  cyto 2,  mito 2,  chlo_mito 2  (predict for XP_039683071.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_039683071.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
120576130
mtr-r.5
for
120576130
mtr-u.5
for
120576132
mtr-u.5
for
rps4
mtr-u.5
for
120576897
gma-u.5
for
rps4
ppo-u.5
for
rps4
ath-u.5
for
rps4
vvi-u.5
for
rps4
ghi-r.1
for
rps4
cit-r.1
for
rps4
sly-u.5
for
rps4
sot-r.1
for
rps4
nta-r.1
for
rps4
osa-u.5
for
rps4
zma-u.5
for
rps4
sbi-r.1
for
rps4
bdi-r.1
for
rps4


Ortholog ID: 11146
Species mtr mtr mtr gma ppo ath vvi ghi cit sly sot nta osa zma sbi bdi
Symbol LOC120576130 LOC120576132 LOC120576897 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4 rps4
Function* 30S ribosomal protein S4, chloroplastic 30S ribosomal protein S4, chloroplastic 30S ribosomal protein S4, chloroplastic ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr00195 Photosynthesis 6
mtr00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 8
gma00195 Photosynthesis 6
gma03010 Ribosome 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 10
vvi00195 Photosynthesis 8
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 10
ghi00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
sly00190 Oxidative phosphorylation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot00195 Photosynthesis 4
sot00190 Oxidative phosphorylation 3
sot01200 Carbon metabolism 2
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 6
osa03010 Ribosome 4
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 8
zma03010 Ribosome 6
zma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi00195 Photosynthesis 4
sbi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 6
bdi03010 Ribosome 3
bdi00195 Photosynthesis 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 120576130 120576132 120576897 3989263 4929666 844765 4025094 3989146 4271134 3950465 4099972 800429 3131457 845238 4549191 6439771
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