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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25493706   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493707   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493705   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 gma-u.5   100815857   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 gma-u.5   100801257   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ppo-u.5   7453806   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ath-u.5   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100246746   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 sly-u.5   101244173   pentatricopeptide repeat-containing protein 
 osa-u.5   4323841   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 zma-u.5   100303930   uncharacterized LOC100303930 
 zma-u.5   100193771   uncharacterized LOC100193771 

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Top 50 coexpressed genes to 25493706 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25493706 (mtr-u.5 coexpression data)

CoexMap"120580575"


mtrLOC120580575 | Entrez gene ID : 120580575    
Species mtr gma ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 3 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008380 [list] [network] RNA splicing  (188 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_039690405.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 2  (predict for XP_039690405.1)
Subcellular
localization
TargetP
other 7,  scret 4  (predict for XP_039690405.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25493706
mtr-u.5
for
25493707
mtr-u.5
for
25493705
gma-u.5
for
100815857
gma-u.5
for
100801257
ppo-u.5
for
7453806
ath-u.5
for
BIR6
vvi-u.5
for
100246746
sly-u.5
for
101244173
osa-u.5
for
4323841
zma-u.5
for
100303930
zma-u.5
for
100193771


Ortholog ID: 6890
Species mtr mtr gma gma ppo ath bra bra vvi ghi ghi cit sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC25493705 LOC25493706 LOC100801257 LOC100815857 LOC7453806 BIR6 LOC103873543 LOC103873160 LOC100246746 LOC107922928 LOC107910906 LOC102624687 LOC101244173 LOC102583268 LOC107814104 LOC107772918 LOC4323841 LOC100303930 LOC100193771 LOC123080975 LOC123072808 LOC123445676 LOC8078052 LOC100837478
Function* pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic uncharacterized LOC100303930 uncharacterized LOC100193771 pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25493705 25493706 100801257 100815857 7453806 823983 103873543 103873160 100246746 107922928 107910906 102624687 101244173 102583268 107814104 107772918 4323841 100303930 100193771 123080975 123072808 123445676 8078052 100837478
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