ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11429679	polyadenylate-binding protein 2
mtr-u.5	11445084	polyadenylate-binding protein 8
gma-u.5	100778879	polyadenylate-binding protein 8
gma-u.5	100813735	polyadenylate-binding protein 2
gma-u.5	100811385	polyadenylate-binding protein 2
ppo-u.5	7492048	polyadenylate-binding protein 8
ppo-u.5	7462869	polyadenylate-binding protein 2
ath-u.5	PAB4	poly(A) binding protein 4
vvi-u.5	100241923	polyadenylate-binding protein 2-like
vvi-u.5	100255846	polyadenylate-binding protein 2-like
vvi-u.5	100262903	polyadenylate-binding protein 2
sly-u.5	101258105	polyadenylate-binding protein 8-like
sly-u.5	101261596	polyadenylate-binding protein 2-like
sly-u.5	101264108	polyadenylate-binding protein 3
osa-u.5	4345242	polyadenylate-binding protein 2
osa-u.5	4336331	polyadenylate-binding protein 2
osa-u.5	4341408	polyadenylate-binding protein 5
zma-u.5	100381531	Polyadenylate-binding protein 2
zma-u.5	103641822	polyadenylate-binding protein 2
zma-u.5	100383542	uncharacterized LOC100383542

Top 50 coexpressed genes to 11429679 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11429679 (mtr-u.5 coexpression data)

CoexMap"120580893"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03015 [list] [network] mRNA surveillance pathway (125 genes)

mtr03018 [list] [network] RNA degradation (117 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_039691042.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 1, cyto 1, mito 1, chlo_mito 1

(predict for XP_039691042.1)

Subcellular
localization
TargetP

other 4

(predict for XP_039691042.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11429679	mtr-u.5 for 11445084	gma-u.5 for 100778879	gma-u.5 for 100813735	gma-u.5 for 100811385	ppo-u.5 for 7492048	ppo-u.5 for 7462869	ath-u.5 for PAB4	vvi-u.5 for 100241923	vvi-u.5 for 100255846	vvi-u.5 for 100262903	sly-u.5 for 101258105	sly-u.5 for 101261596	sly-u.5 for 101264108	osa-u.5 for 4345242	osa-u.5 for 4336331	osa-u.5 for 4341408	zma-u.5 for 100381531	zma-u.5 for 103641822	zma-u.5 for 100383542

Ortholog

Ortholog ID: 542

Species

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PAB2

PABP2

Function^*

polyadenylate-binding protein 3

polyadenylate-binding protein 2

polyadenylate-binding protein 3

polyadenylate-binding protein 2

poly(A) binding protein 2

polyadenylate-binding protein 2

polyadenylate-binding protein 2-like

polyadenylate-binding protein 8

polyadenylate-binding protein 4

polyadenylate-binding protein 5-like

poly A-binding protein 2

polyadenylate-binding protein 3

polyadenylate-binding protein 2-like

polyadenylate-binding protein 8-like

polyadenylate-binding protein 2

uncharacterized LOC100502035

uncharacterized LOC100383542

polyadenylate-binding protein 2

polyadenylate-binding protein 2-like

polyadenylate-binding protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03015	mRNA surveillance pathway	4
ppo03018	RNA degradation	4
ppo01210	2-Oxocarboxylic acid metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	5
ath00620	Pyruvate metabolism	4
ath00190	Oxidative phosphorylation	4
ath00020	Citrate cycle (TCA cycle)	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	6
vvi03015	mRNA surveillance pathway	2
vvi03018	RNA degradation	2
vvi03010	Ribosome	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03015	mRNA surveillance pathway	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	7
bna00230	Purine metabolism	5
bna01232	Nucleotide metabolism	5
bna01240	Biosynthesis of cofactors	5
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot01240	Biosynthesis of cofactors	3
sot00190	Oxidative phosphorylation	3
sot04145	Phagosome	3
sot01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta01230	Biosynthesis of amino acids	2
nta03015	mRNA surveillance pathway	2
nta03018	RNA degradation	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	13
osa03015	mRNA surveillance pathway	4
osa03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	5
osa04141	Protein processing in endoplasmic reticulum	3
osa03018	RNA degradation	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	5
zma00970	Aminoacyl-tRNA biosynthesis	3
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03018	RNA degradation	3
tae04814	Motor proteins	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	6
tae03015	mRNA surveillance pathway	4
tae01230	Biosynthesis of amino acids	4
tae03018	RNA degradation	3
tae00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	4
hvu00020	Citrate cycle (TCA cycle)	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	7
sbi00970	Aminoacyl-tRNA biosynthesis	3
sbi03015	mRNA surveillance pathway	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	4
sbi03010	Ribosome	2
sbi03015	mRNA surveillance pathway	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6
bdi03015	mRNA surveillance pathway	4
bdi03018	RNA degradation	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	14
bdi03015	mRNA surveillance pathway	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	11
cre01230	Biosynthesis of amino acids	6
cre01210	2-Oxocarboxylic acid metabolism	3
cre03013	Nucleocytoplasmic transport	2
cre00290	Valine, leucine and isoleucine biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

100798998

100780329

7467793

18104862

829557

103844362

100241923

100255846

107894289

107908893

106391056

106381077

102577977

102615487

101261596

101258105

102585145

107813138

107814429

4346409

4345242

100502035

100383542

123154688

123053837

123411286

123427184

110432373

8075901

100828713

100827201

5715532

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Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	3	2	1	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11429679 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11429679 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**