ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	121209640	transcription factor BIM1
ath-u.5	BIM1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	BIM3	BES1-interacting Myc-like protein 3
ath-u.5	BIM2	BES1-interacting Myc-like protein 2
gma-u.5	100791730	transcription factor BIM3
gma-u.5	100795416	transcription factor BIM2-like
gma-u.5	100800999	transcription factor BIM1
vvi-u.5	109123264	uncharacterized LOC109123264
vvi-u.5	100246438	transcription factor BIM2
vvi-u.5	100246122	transcription factor BIM2
ppo-u.5	18097667	transcription factor BIM2
ppo-u.5	7487119	transcription factor BIM1
ppo-u.5	7483907	transcription factor BIM2
mtr-u.5	11431634	transcription factor BIM2
mtr-u.5	11428511	transcription factor BIM2
mtr-u.5	25493922	transcription factor BIM1
sly-u.5	101264225	transcription factor BIM1
sly-u.5	101254588	transcription factor BIM2-like
sly-u.5	101258066	transcription factor BIM2-like
osa-u.5	4345899	transcription factor BIM2
osa-u.5	4330593	transcription factor BIM2
osa-u.5	4347359	transcription factor BIM2
zma-u.5	100273866	uncharacterized LOC100273866
zma-u.5	100279738	Transcription factor BIM3
zma-u.5	100191909	uncharacterized LOC100191909

Annotation

functional annotation

KEGG

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(617 genes)

IEA

GO CC

GO MF

GO:0046983 [list] [network] protein dimerization activity	(1206 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(3140 genes)	IEA

Protein

XP_040936547.1 [sequence] [blastp]
XP_040936548.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_040936547.1)
nucl 10	(predict for XP_040936548.1)

Subcellular
localization
TargetP

other 6, mito 4	(predict for XP_040936547.1)
other 6, mito 4	(predict for XP_040936548.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121209640	ath-u.5 for BIM1	ath-u.5 for BIM3	ath-u.5 for BIM2	gma-u.5 for 100791730	gma-u.5 for 100795416	gma-u.5 for 100800999	vvi-u.5 for 109123264	vvi-u.5 for 100246438	vvi-u.5 for 100246122	ppo-u.5 for 18097667	ppo-u.5 for 7487119	ppo-u.5 for 7483907	mtr-u.5 for 11431634	mtr-u.5 for 11428511	mtr-u.5 for 25493922	sly-u.5 for 101264225	sly-u.5 for 101254588	sly-u.5 for 101258066	osa-u.5 for 4345899	osa-u.5 for 4330593	osa-u.5 for 4347359	zma-u.5 for 100273866	zma-u.5 for 100279738	zma-u.5 for 100191909

Ortholog

Ortholog ID: 998

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107931413

LOC121209640

BIM3

BIM2

Function^*

transcription factor BIM1

BES1-interacting Myc-like protein 3

BES1-interacting Myc-like protein 2

transcription factor BIM2

transcription factor BIM1

transcription factor BIM2-like

transcription factor BIM1

transcription factor BIM3

transcription factor BIM2-like

transcription factor BIM1

transcription factor BIM2

transcription factor BIM1

transcription factor BIM2

transcription factor BIM2-like

transcription factor BIM1

transcription factor BIM2

uncharacterized LOC100191909

Transcription factor BIM3

transcription factor BIM2

transcription factor BIM1-like

transcription factor BIM2-like

transcription factor BIM1

transcription factor BIM2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2
bna00100	Steroid biosynthesis	2
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	2
mtr00410	beta-Alanine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	5
sot04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00670	One carbon pool by folate	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00350	Tyrosine metabolism	2
osa00360	Phenylalanine metabolism	2
osa00380	Tryptophan metabolism	2
osa00901	Indole alkaloid biosynthesis	2
osa00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	8
zma04016	MAPK signaling pathway - plant	4
zma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae04130	SNARE interactions in vesicular transport	3
tae04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi00592	alpha-Linolenic acid metabolism	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

107931413

121209640

833877

843233

103852546

103831309

106439973

106393409

102629701

102618719

100795416

100792653

100243993

100246122

18097667

7483907

11428511

25493922

101260613

101258066

102598923

102579730

107785031

107796326

4345899

4330593

100191909

100279738

123161900

123138096

123399101

123411146

8055367

100837123

100826888

5715894

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 121209640 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121209640 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121209640 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121209640 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**