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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898044   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 ghi-r.1   121204822   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 ghi-r.1   107940057   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 ath-u.5   AT3G07860   Ubiquitin-like superfamily protein 
 bra-r.6   103859246   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 bna-r.1   111204509   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 bna-r.1   106388993   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 cit-r.1   102625053   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 gma-u.5   100815924   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 vvi-u.5   109121397   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 mtr-u.5   11446596   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 sly-u.5   101252038   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 sot-r.1   102602180   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 nta-r.1   107817456   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 nta-r.1   107760538   U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like 
 osa-u.5   4337305   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 zma-u.5   100381558   uncharacterized LOC100381558 
 tae-r.2   123046961   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 tae-r.2   123054791   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 tae-r.2   123190632   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 hvu-r.1   123428014   U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like 
 sbi-r.1   8082553   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 bdi-r.1   100829657   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 

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Top 50 coexpressed genes to 107898044 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898044 (ghi-r.1 coexpression data)

CoexMap"121212129"


ghiLOC121212129 | Entrez gene ID : 121212129    
Species ghi ath bra bna cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 3 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO MF
Protein XP_040940272.1 [sequence] [blastp]
XP_040940273.1 [sequence] [blastp]
XP_040940274.1 [sequence] [blastp]
XP_040940275.1 [sequence] [blastp]
XP_040940276.1 [sequence] [blastp]
XP_040940277.1 [sequence] [blastp]
XP_040940278.1 [sequence] [blastp]
XP_040940279.1 [sequence] [blastp]
XP_040940280.1 [sequence] [blastp]
XP_040940281.1 [sequence] [blastp]
XP_040940282.1 [sequence] [blastp]
XP_040940283.1 [sequence] [blastp]
XP_040940284.1 [sequence] [blastp]
XP_040940285.1 [sequence] [blastp]
XP_040940286.1 [sequence] [blastp]
XP_040940287.1 [sequence] [blastp]
XP_040940288.1 [sequence] [blastp]
XP_040940289.1 [sequence] [blastp]
XP_040940290.1 [sequence] [blastp]
XP_040940291.1 [sequence] [blastp]
XP_040940292.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940272.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940273.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940274.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940275.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940276.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940277.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940278.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940279.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940280.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940281.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940282.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940283.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940284.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940285.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940286.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940287.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940288.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940289.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940290.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940291.1)
cyto 6,  cyto_nucl 4,  chlo 1,  nucl 1,  chlo_mito 1  (predict for XP_040940292.1)
Subcellular
localization
TargetP
other 7  (predict for XP_040940272.1)
other 7  (predict for XP_040940273.1)
other 7  (predict for XP_040940274.1)
other 7  (predict for XP_040940275.1)
other 7  (predict for XP_040940276.1)
other 7  (predict for XP_040940277.1)
other 7  (predict for XP_040940278.1)
other 7  (predict for XP_040940279.1)
other 7  (predict for XP_040940280.1)
other 7  (predict for XP_040940281.1)
other 7  (predict for XP_040940282.1)
other 7  (predict for XP_040940283.1)
other 7  (predict for XP_040940284.1)
other 7  (predict for XP_040940285.1)
other 7  (predict for XP_040940286.1)
other 7  (predict for XP_040940287.1)
other 7  (predict for XP_040940288.1)
other 7  (predict for XP_040940289.1)
other 7  (predict for XP_040940290.1)
other 7  (predict for XP_040940291.1)
other 7  (predict for XP_040940292.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898044
ghi-r.1
for
121204822
ghi-r.1
for
107940057
ath-u.5
for
AT3G07860
bra-r.6
for
103859246
bna-r.1
for
111204509
bna-r.1
for
106388993
cit-r.1
for
102625053
gma-u.5
for
100815924
vvi-u.5
for
109121397
mtr-u.5
for
11446596
sly-u.5
for
101252038
sot-r.1
for
102602180
nta-r.1
for
107817456
nta-r.1
for
107760538
osa-u.5
for
4337305
zma-u.5
for
100381558
tae-r.2
for
123046961
tae-r.2
for
123054791
tae-r.2
for
123190632
hvu-r.1
for
123428014
sbi-r.1
for
8082553
bdi-r.1
for
100829657


Ortholog ID: 6862
Species ghi ghi ghi ath bra bna bna cit gma vvi mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107932477 LOC107904002 LOC121226832 AT3G07860 LOC103859246 LOC111204509 LOC106388993 LOC102625053 LOC100815924 LOC109121397 LOC11446596 LOC101252038 LOC102602180 LOC107817456 LOC107760538 LOC4337305 LOC100381558 LOC123046961 LOC123054791 LOC123190632 LOC123428014 LOC8082553 LOC100829657
Function* U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein Ubiquitin-like superfamily protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like U11/U12 small nuclear ribonucleoprotein 25 kDa protein uncharacterized LOC100381558 U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
bna03008 Ribosome biogenesis in eukaryotes 8
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03008 Ribosome biogenesis in eukaryotes 5
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107932477 107904002 121226832 819977 103859246 111204509 106388993 102625053 100815924 109121397 11446596 101252038 102602180 107817456 107760538 4337305 100381558 123046961 123054791 123190632 123428014 8082553 100829657
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