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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121213710   cyclin-T1-4 
 ghi-r.1   107933082   cyclin-T1-4 
 cit-r.1   102619049   cyclin-T1-4 
 gma-u.5   100797811   cyclin family protein 
 gma-u.5   100783282   cyclin-T1-3 
 gma-u.5   100782957   cyclin-T1-3 
 vvi-u.5   100249379   cyclin-T1-3 
 ppo-u.5   7457863   cyclin-T1-4 
 ppo-u.5   7459033   cyclin-T1-4 
 mtr-u.5   11416201   cyclin-T1-3 
 sly-u.5   101258485   putative cyclin-T1-1 
 sot-r.1   102590048   cyclin-T1-3-like 
 nta-r.1   107796000   putative cyclin-T1-1 
 nta-r.1   107783979   putative cyclin-T1-1 
 zma-u.5   100278891   uncharacterized LOC100278891 
 tae-r.2   123078285   cyclin-T1-5 
 tae-r.2   123069841   cyclin-T1-5 
 tae-r.2   123061225   cyclin-T1-5 
 hvu-r.1   123443644   cyclin-T1-5-like 
 sbi-r.1   8074914   cyclin-T1-4 
 bdi-r.1   100823057   cyclin-T1-5 

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Top 50 coexpressed genes to 121213710 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121213710 (ghi-r.1 coexpression data)

CoexMap"121213710"


ghiLOC121213710 | Entrez gene ID : 121213710    
Species ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi osa bna cre ath bra
Paralog 2 1 3 1 2 1 1 1 2 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03250 [list] [network] Viral life cycle - HIV-1 (90 genes)
GO BP
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (65 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0008024 [list] [network] cyclin/CDK positive transcription elongation factor complex  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0061575 [list] [network] cyclin-dependent protein serine/threonine kinase activator activity  (12 genes)  IEA  
Protein XP_040942622.1 [sequence] [blastp]
XP_040942623.1 [sequence] [blastp]
XP_040942624.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for XP_040942622.1)
nucl 8,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_040942623.1)
nucl 8,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_040942624.1)
Subcellular
localization
TargetP
mito 7,  other 6  (predict for XP_040942622.1)
mito 7,  other 6  (predict for XP_040942623.1)
mito 7,  other 6  (predict for XP_040942624.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121213710
ghi-r.1
for
107933082
cit-r.1
for
102619049
gma-u.5
for
100797811
gma-u.5
for
100783282
gma-u.5
for
100782957
vvi-u.5
for
100249379
ppo-u.5
for
7457863
ppo-u.5
for
7459033
mtr-u.5
for
11416201
sly-u.5
for
101258485
sot-r.1
for
102590048
nta-r.1
for
107796000
nta-r.1
for
107783979
zma-u.5
for
100278891
tae-r.2
for
123078285
tae-r.2
for
123069841
tae-r.2
for
123061225
hvu-r.1
for
123443644
sbi-r.1
for
8074914
bdi-r.1
for
100823057


Ortholog ID: 12074
Species ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta zma tae tae tae hvu sbi bdi
Symbol LOC121213710 LOC107933082 LOC102619049 LOC100797811 LOC100783282 LOC100782957 LOC100249379 LOC7457863 LOC7459033 LOC11416201 LOC101258485 LOC102590048 LOC107796000 LOC107783979 LOC100278891 LOC123078285 LOC123069841 LOC123061225 LOC123443644 LOC8074914 LOC100823057
Function* cyclin-T1-4 cyclin-T1-4 cyclin-T1-4 cyclin family protein cyclin-T1-3 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-4 cyclin-T1-3 putative cyclin-T1-1 cyclin-T1-3-like putative cyclin-T1-1 putative cyclin-T1-1 uncharacterized LOC100278891 cyclin-T1-5 cyclin-T1-5 cyclin-T1-5 cyclin-T1-5-like cyclin-T1-4 cyclin-T1-5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121213710 107933082 102619049 100797811 100783282 100782957 100249379 7457863 7459033 11416201 101258485 102590048 107796000 107783979 100278891 123078285 123069841 123061225 123443644 8074914 100823057
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