ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121216013	uncharacterized LOC121216013
ghi-r.1	107957187	uncharacterized LOC107957187
ghi-r.1	107923171	uncharacterized LOC107923171
ghi-r.1	107920411	uncharacterized LOC107920411
ath-u.5	AT3G07565	histone H2A deubiquitinase (DUF3755)
ath-u.5	AT1G10820	hypothetical protein (DUF3755)
bra-r.6	103858071	uncharacterized LOC103858071
bra-r.6	103838499	uncharacterized LOC103838499
bra-r.6	103849243	uncharacterized LOC103849243
bna-r.1	106353859	uncharacterized LOC106353859
bna-r.1	106354001	uncharacterized LOC106354001
cit-r.1	102620128	uncharacterized LOC102620128
cit-r.1	102612668	uncharacterized LOC102612668
cit-r.1	102617437	uncharacterized LOC102617437
gma-u.5	100797061	uncharacterized LOC100797061
gma-u.5	100796928	uncharacterized LOC100796928
gma-u.5	100795518	uncharacterized LOC100795518
vvi-u.5	100852665	uncharacterized LOC100852665
vvi-u.5	100261483	uncharacterized LOC100261483
vvi-u.5	100257710	uncharacterized LOC100257710
ppo-u.5	7459067	uncharacterized LOC7459067
ppo-u.5	7469359	uncharacterized LOC7469359
ppo-u.5	7469578	uncharacterized LOC7469578
mtr-u.5	25487913	uncharacterized LOC25487913
mtr-u.5	25492813	uncharacterized LOC25492813
sly-u.5	101247846	uncharacterized LOC101247846
sly-u.5	101249553	uncharacterized LOC101249553
sly-u.5	101248502	uncharacterized LOC101248502
sot-r.1	102586365	uncharacterized LOC102586365
sot-r.1	102603678	uncharacterized LOC102603678
sot-r.1	102595898	putative uncharacterized protein DDB_G0287265
nta-r.1	107780050	uncharacterized LOC107780050
nta-r.1	107823853	uncharacterized LOC107823853
nta-r.1	107802771	uncharacterized LOC107802771
osa-u.5	107278299	uncharacterized LOC107278299
osa-u.5	4336435	uncharacterized LOC4336435
osa-u.5	4330057	uncharacterized LOC4330057
zma-u.5	100382732	uncharacterized LOC100382732
zma-u.5	100276256	uncharacterized LOC100276256
zma-u.5	100272444	uncharacterized LOC100272444
tae-r.2	123055146	uncharacterized LOC123055146
tae-r.2	123047342	uncharacterized LOC123047342
tae-r.2	123189644	homeobox protein Hox-B3
hvu-r.1	123401168	uncharacterized LOC123401168
hvu-r.1	123410737	uncharacterized LOC123410737
hvu-r.1	123427117	homeobox protein Hox-B3-like
sbi-r.1	110434662	uncharacterized LOC110434662
sbi-r.1	8082844	uncharacterized LOC8082844
sbi-r.1	8070311	uncharacterized LOC8070311
bdi-r.1	100843315	uncharacterized LOC100843315
bdi-r.1	100843322	uncharacterized LOC100843322
bdi-r.1	100845515	uncharacterized LOC100845515
cre-r.1	CHLRE_03g170400v5	uncharacterized protein

Top 50 coexpressed genes to 121216013 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121216013 (ghi-r.1 coexpression data)

CoexMap"121216013"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_040947039.1 [sequence] [blastp]
XP_040947040.1 [sequence] [blastp]
XP_040947041.1 [sequence] [blastp]
XP_040947042.1 [sequence] [blastp]
XP_040947043.1 [sequence] [blastp]
XP_040947044.1 [sequence] [blastp]
XP_040947045.1 [sequence] [blastp]
XP_040947046.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1	(predict for XP_040947039.1)
nucl 8, chlo 2	(predict for XP_040947040.1)
nucl 7, cyto_nucl 4, chlo 2	(predict for XP_040947041.1)
nucl 8, chlo 2	(predict for XP_040947042.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for XP_040947043.1)
nucl 4, cyto 4, chlo 2, cysk_nucl 2, nucl_plas 2	(predict for XP_040947044.1)
nucl 5, cyto_nucl 4, cyto 2, cysk 1	(predict for XP_040947045.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_040947046.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for XP_040947039.1)
other 6, chlo 3	(predict for XP_040947040.1)
other 6, chlo 3	(predict for XP_040947041.1)
other 6, chlo 3	(predict for XP_040947042.1)
chlo 5, other 4	(predict for XP_040947043.1)
chlo 5, other 4	(predict for XP_040947044.1)
other 9	(predict for XP_040947045.1)
other 6, mito 4	(predict for XP_040947046.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121216013	ghi-r.1 for 107957187	ghi-r.1 for 107923171	ghi-r.1 for 107920411	ath-u.5 for AT3G07565	ath-u.5 for AT1G10820	bra-r.6 for 103858071	bra-r.6 for 103838499	bra-r.6 for 103849243	bna-r.1 for 106353859	bna-r.1 for 106354001	cit-r.1 for 102620128	cit-r.1 for 102612668	cit-r.1 for 102617437	gma-u.5 for 100797061	gma-u.5 for 100796928	gma-u.5 for 100795518	vvi-u.5 for 100852665	vvi-u.5 for 100261483	vvi-u.5 for 100257710	ppo-u.5 for 7459067	ppo-u.5 for 7469359	ppo-u.5 for 7469578	mtr-u.5 for 25487913	mtr-u.5 for 25492813	sly-u.5 for 101247846	sly-u.5 for 101249553	sly-u.5 for 101248502	sot-r.1 for 102586365	sot-r.1 for 102603678	sot-r.1 for 102595898	nta-r.1 for 107780050	nta-r.1 for 107823853	nta-r.1 for 107802771	osa-u.5 for 107278299	osa-u.5 for 4336435	osa-u.5 for 4330057	zma-u.5 for 100382732	zma-u.5 for 100276256	zma-u.5 for 100272444	tae-r.2 for 123055146	tae-r.2 for 123047342	tae-r.2 for 123189644	hvu-r.1 for 123401168	hvu-r.1 for 123410737	hvu-r.1 for 123427117	sbi-r.1 for 110434662	sbi-r.1 for 8082844	sbi-r.1 for 8070311	bdi-r.1 for 100843315	bdi-r.1 for 100843322	bdi-r.1 for 100845515	cre-r.1 for CHLRE_03g170400v5

Ortholog

Ortholog ID: 425

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FSB1

Function^*

uncharacterized LOC121216013

uncharacterized LOC107886350

uncharacterized LOC107913494

hypothetical protein (DUF3755)

ZZ-type zinc finger protein, putative (DUF3755)

uncharacterized LOC103838499

uncharacterized LOC103849243

uncharacterized LOC103859231

uncharacterized LOC106402604

uncharacterized LOC106402057

uncharacterized LOC106389002

uncharacterized LOC102620128

uncharacterized LOC102612668

uncharacterized LOC102617437

uncharacterized LOC100796928

uncharacterized LOC100775443

uncharacterized LOC100261483

uncharacterized LOC100257710

uncharacterized LOC100249209

uncharacterized LOC7469359

uncharacterized LOC7469578

uncharacterized LOC7471473

uncharacterized LOC25487913

uncharacterized LOC25492813

uncharacterized LOC101249553

uncharacterized LOC101250883

fruit SANT/MYB Binding protein1

uncharacterized LOC102603678

putative uncharacterized protein DDB_G0287265

uncharacterized LOC102596179

uncharacterized LOC107791984

uncharacterized LOC107784298

uncharacterized LOC107807001

uncharacterized LOC4336435

uncharacterized LOC4330057

uncharacterized LOC4344413

uncharacterized LOC100382732

uncharacterized LOC100276256

uncharacterized LOC100192021

uncharacterized LOC123055146

homeobox protein Hox-B3

uncharacterized LOC123137551

uncharacterized LOC123410737

homeobox protein Hox-B3-like

uncharacterized LOC123428388

uncharacterized LOC110434662

uncharacterized LOC8064311

uncharacterized LOC8060197

uncharacterized LOC100843315

uncharacterized LOC100843322

uncharacterized LOC100846119

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04142	Lysosome	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	3
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3
tae01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

121216013

107886350

107913494

842361

843144

103838499

103849243

103859231

106402604

106402057

106389002

102620128

102612668

102617437

100796928

100775443

100261483

100257710

100249209

7469359

7469578

7471473

25487913

25492813

101249553

101250883

101268497

102603678

102595898

102596179

107791984

107784298

107807001

4336435

4330057

4344413

100382732

100276256

100192021

123055146

123045890

123137551

123410737

123427117

123428388

110434662

8064311

8060197

100843315

100843322

100846119

66052827

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	3	3	3	2	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121216013 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121216013 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**