ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121219163	uncharacterized LOC121219163
ghi-r.1	107956213	60S ribosomal protein L29-1
ghi-r.1	121206410	60S ribosomal protein L29-1
ghi-r.1	107926378	60S ribosomal protein L29-1
ath-u.5	AT3G06680	Ribosomal L29e protein family
ath-u.5	AT3G06700	Ribosomal L29e protein family
bra-r.6	103859176	60S ribosomal protein L29-2
bra-r.6	103870725	60S ribosomal protein L29-1
bra-r.6	103849728	60S ribosomal protein L29-1
bna-r.1	106346115	60S ribosomal protein L29-1
bna-r.1	125602529	60S ribosomal protein L29-1
cit-r.1	102624936	60S ribosomal protein L29-1
cit-r.1	102626567	60S ribosomal protein L29-1
gma-u.5	100810108	60S ribosomal protein L29-1
gma-u.5	100499874	60S ribosomal protein L29-1
gma-u.5	100777189	60S ribosomal protein L29-1
ppo-u.5	7482267	60S ribosomal protein L29-1
ppo-u.5	7481396	60S ribosomal protein L29-1
ppo-u.5	7471116	60S ribosomal protein L29-1
mtr-u.5	25494114	60S ribosomal protein L29-1
mtr-u.5	11427897	60S ribosomal protein L29-1
sly-u.5	DDTFR19	ripening regulated protein DDTFR19
sly-u.5	101263912	large ribosomal subunit protein eL29y-like
sot-r.1	102582754	60S ribosomal protein L29-2
sot-r.1	102581332	60S ribosomal protein L29-2-like
osa-u.5	4338517	large ribosomal subunit protein eL29z
osa-u.5	4323904	large ribosomal subunit protein eL29z
zma-u.5	100285060	60S ribosomal protein L29-like
zma-u.5	100281996	60S ribosomal protein L29-like
zma-u.5	100281939	60S ribosomal protein L29-like
tae-r.2	123052873	60S ribosomal protein L29-1
tae-r.2	123181738	60S ribosomal protein L29-1
tae-r.2	123129241	60S ribosomal protein L29-1
hvu-r.1	123440896	60S ribosomal protein L29-1-like
sbi-r.1	8061891	60S ribosomal protein L29-1
sbi-r.1	8083759	60S ribosomal protein L29-2
bdi-r.1	100838587	60S ribosomal protein L29-1
bdi-r.1	100846456	60S ribosomal protein L29-1
cre-r.1	CHLRE_03g207050v5	ribosomal protein L29

Top 50 coexpressed genes to 121219163 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121219163 (ghi-r.1 coexpression data)

CoexMap"121219163"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0002181 [list] [network] cytoplasmic translation

(214 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(467 genes)	IEA
GO:0005840 [list] [network] ribosome	(1110 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(1075 genes)

IEA

Protein

XP_040952783.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, extr 2, nucl 1, vacu 1

(predict for XP_040952783.1)

Subcellular
localization
TargetP

scret 1

(predict for XP_040952783.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121219163	ghi-r.1 for 107956213	ghi-r.1 for 121206410	ghi-r.1 for 107926378	ath-u.5 for AT3G06680	ath-u.5 for AT3G06700	bra-r.6 for 103859176	bra-r.6 for 103870725	bra-r.6 for 103849728	bna-r.1 for 106346115	bna-r.1 for 125602529	cit-r.1 for 102624936	cit-r.1 for 102626567	gma-u.5 for 100810108	gma-u.5 for 100499874	gma-u.5 for 100777189	ppo-u.5 for 7482267	ppo-u.5 for 7481396	ppo-u.5 for 7471116	mtr-u.5 for 25494114	mtr-u.5 for 11427897	sly-u.5 for DDTFR19	sly-u.5 for 101263912	sot-r.1 for 102582754	sot-r.1 for 102581332	osa-u.5 for 4338517	osa-u.5 for 4323904	zma-u.5 for 100285060	zma-u.5 for 100281996	zma-u.5 for 100281939	tae-r.2 for 123052873	tae-r.2 for 123181738	tae-r.2 for 123129241	hvu-r.1 for 123440896	sbi-r.1 for 8061891	sbi-r.1 for 8083759	bdi-r.1 for 100838587	bdi-r.1 for 100846456	cre-r.1 for CHLRE_03g207050v5

Ortholog

Ortholog ID: 3680

Species

ghi

ath

bra

bna

cit

gma

ppo

mtr

sly

sot

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DDTFR19

Function^*

60S ribosomal protein L29-1

60S ribosomal protein L29-2

Ribosomal L29e protein family

60S ribosomal protein L29-2

60S ribosomal protein L29-1

ripening regulated protein DDTFR19

large ribosomal subunit protein eL29y-like

60S ribosomal protein L29-2

60S ribosomal protein L29-2-like

large ribosomal subunit protein eL29z

60S ribosomal protein L29-like

60S ribosomal protein L29-1

60S ribosomal protein L29-1-like

60S ribosomal protein L29-1

60S ribosomal protein L29-2

60S ribosomal protein L29-1

ribosomal protein L29

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	9
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	11
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	17
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	14
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	19

Expression

Expression pattern

Entrez Gene ID^*

121222450

107896617

107938650

819853

819855

103859176

103870725

103849728

106346115

106400541

102624936

102626567

100810108

100499874

100803210

7482267

7481396

7471116

25494114

11427897

544172

101263912

102582754

102581332

4338517

4323904

100285060

100281996

100281939

123052873

123181738

123129241

123440896

8061891

8083759

100838587

100846456

5718833

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	ppo	mtr	sly	sot	osa	zma	tae	hvu	sbi	bdi	cre	vvi	nta
Paralog	4	2	3	2	2	3	3	2	2	2	2	3	3	1	2	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121219163 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121219163 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**