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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121223676   30S ribosomal protein S3, chloroplastic 
 ghi-r.1   121211377   30S ribosomal protein S3, chloroplastic 
 ghi-r.1   rps3   30S ribosomal protein S3 
 ath-u.5   rps3   ribosomal protein S3 
 bna-r.1   rps3   ribosomal protein S3 
 cit-r.1   rps3   ribosomal protein S3 
 gma-u.5   rps3   30S ribosomal protein S3 
 vvi-u.5   rps3   30S ribosomal protein S3 
 ppo-u.5   rps3   ribosomal protein S3 
 mtr-u.5   rps3   ribosomal protein S3 
 mtr-u.5   120580175   30S ribosomal protein S3, chloroplastic 
 mtr-u.5   120579683   30S ribosomal protein S3, chloroplastic 
 sly-u.5   rps3   ribosomal protein S3 
 sot-r.1   rps3   ribosomal protein S3 
 nta-r.1   rps3   30S ribosomal protein S3 
 osa-u.5   rps3   ribosomal protein S3 
 zma-u.5   rps3   ribosomal protein S3 
 sbi-r.1   rps3   ribosomal protein S3 
 bdi-r.1   rps3   ribosomal protein S3 

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Top 50 coexpressed genes to 121223676 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121223676 (ghi-r.1 coexpression data)

CoexMap"121223676"


ghiLOC121223676 | Entrez gene ID : 121223676    
Species ghi ath bna cit gma vvi ppo mtr sly sot nta osa zma sbi bdi bra cre tae hvu
Paralog 3 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (268 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_040961651.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 1,  extr 1,  pero 1,  plas 1,  mito_plas 1  (predict for XP_040961651.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for XP_040961651.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121223676
ghi-r.1
for
121211377
ghi-r.1
for
rps3
ath-u.5
for
rps3
bna-r.1
for
rps3
cit-r.1
for
rps3
gma-u.5
for
rps3
vvi-u.5
for
rps3
ppo-u.5
for
rps3
mtr-u.5
for
rps3
mtr-u.5
for
120580175
mtr-u.5
for
120579683
sly-u.5
for
rps3
sot-r.1
for
rps3
nta-r.1
for
rps3
osa-u.5
for
rps3
zma-u.5
for
rps3
sbi-r.1
for
rps3
bdi-r.1
for
rps3


Ortholog ID: 11144
Species ghi ghi ghi ath bna cit gma vvi ppo mtr mtr mtr sly sot nta osa zma sbi bdi
Symbol LOC121223676 LOC121211377 rps3 rps3 rps3 rps3 rps3 rps3 rps3 rps3 LOC120580175 LOC120579683 rps3 rps3 rps3 rps3 rps3 rps3 rps3
Function* 30S ribosomal protein S3, chloroplastic 30S ribosomal protein S3, chloroplastic 30S ribosomal protein S3 ribosomal protein S3 ribosomal protein S3 ribosomal protein S3 30S ribosomal protein S3 30S ribosomal protein S3 ribosomal protein S3 ribosomal protein S3 30S ribosomal protein S3, chloroplastic 30S ribosomal protein S3, chloroplastic ribosomal protein S3 ribosomal protein S3 30S ribosomal protein S3 ribosomal protein S3 ribosomal protein S3 ribosomal protein S3 ribosomal protein S3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00190 Oxidative phosphorylation 5
mtr00195 Photosynthesis 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr00190 Oxidative phosphorylation 4
mtr03020 RNA polymerase 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03020 RNA polymerase 4
sot00195 Photosynthesis 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
zma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 13
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121223676 121211377 3989142 844719 11541996 4271190 3989335 4025021 4929711 5333113 120580175 120579683 3950406 4099882 800454 3131443 845237 4549090 6439840
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