ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121224441	protein SAR DEFICIENT 1
ghi-r.1	107892037	protein SAR DEFICIENT 1
ghi-r.1	107888771	protein SAR DEFICIENT 1
ghi-r.1	107886258	calmodulin-binding protein 60 A
ath-u.5	AT2G18750	Calmodulin-binding protein
ath-u.5	SARD1	Calmodulin binding protein-like protein
ath-u.5	AT5G62570	Calmodulin binding protein-like protein
bra-r.6	103845193	calmodulin-binding protein 60 B
bra-r.6	103830730	protein SAR DEFICIENT 1
bra-r.6	103854686	calmodulin-binding protein 60 G
bna-r.1	106375638	calmodulin-binding protein 60 F-like
bna-r.1	111207571	calmodulin-binding protein 60 G
bna-r.1	111198122	calmodulin-binding protein 60 G
cit-r.1	102612087	protein SAR DEFICIENT 1-like
cit-r.1	102614233	calmodulin-binding protein 60 B-like
cit-r.1	102626942	hypothetical protein
gma-u.5	100804548	calmodulin-binding protein 60 A
gma-u.5	100805759	calmodulin-binding protein 60 D
gma-u.5	100806393	calmodulin-binding protein 60 B
vvi-u.5	104881366	calmodulin-binding protein 60 B
vvi-u.5	100264980	calmodulin-binding protein 60 B
vvi-u.5	100242382	protein SAR DEFICIENT 1
ppo-u.5	7493515	protein SAR DEFICIENT 1
ppo-u.5	7461593	calmodulin-binding protein 60 C
ppo-u.5	7453751	calmodulin-binding protein 60 A
mtr-u.5	25488303	calmodulin-binding protein 60 F
mtr-u.5	11443585	calmodulin-binding protein 60 A
mtr-u.5	11436711	protein SAR DEFICIENT 1
sly-u.5	101268806	calmodulin-binding protein 60 D
sly-u.5	101267354	calmodulin-binding protein 60 B
sly-u.5	101256262	protein SAR DEFICIENT 1-like
sot-r.1	107063218	uncharacterized LOC107063218
sot-r.1	102583829	calmodulin-binding protein 60 A
sot-r.1	102604313	protein SAR DEFICIENT 1-like
nta-r.1	107830019	protein SAR DEFICIENT 1
nta-r.1	107758940	calmodulin-binding protein 60 A
nta-r.1	107813930	calmodulin-binding protein 60 B-like
osa-u.5	4325688	protein SAR DEFICIENT 1
osa-u.5	4328487	calmodulin-binding protein 60 C
osa-u.5	107276160	protein SAR DEFICIENT 1
zma-u.5	100283672	calmodulin binding protein
zma-u.5	100285136	calmodulin binding protein
zma-u.5	100286080	uncharacterized LOC100286080
tae-r.2	123105718	calmodulin-binding protein 60 A
tae-r.2	123136584	calmodulin-binding protein 60 B
hvu-r.1	123404800	calmodulin-binding protein 60 D-like
hvu-r.1	123453101	calmodulin-binding protein 60 A-like
sbi-r.1	8071013	protein SAR DEFICIENT 1
sbi-r.1	8079711	calmodulin-binding protein 60 A
bdi-r.1	100822237	calmodulin-binding protein 60 B
bdi-r.1	100825599	protein SAR DEFICIENT 1

Top 50 coexpressed genes to 121224441 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121224441 (ghi-r.1 coexpression data)

CoexMap"121224441"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080142 [list] [network] regulation of salicylic acid biosynthetic process

(24 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0005516 [list] [network] calmodulin binding	(180 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(1947 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(3140 genes)	IEA

Protein

XP_040963693.1 [sequence] [blastp]
XP_040963694.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 2, mito 1, cysk_nucl 1, nucl_plas 1	(predict for XP_040963693.1)
cyto 6, chlo 4	(predict for XP_040963694.1)

Subcellular
localization
TargetP

chlo 6, other 6	(predict for XP_040963693.1)
chlo 3, other 3	(predict for XP_040963694.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121224441	ghi-r.1 for 107892037	ghi-r.1 for 107888771	ghi-r.1 for 107886258	ath-u.5 for AT2G18750	ath-u.5 for SARD1	ath-u.5 for AT5G62570	bra-r.6 for 103845193	bra-r.6 for 103830730	bra-r.6 for 103854686	bna-r.1 for 106375638	bna-r.1 for 111207571	bna-r.1 for 111198122	cit-r.1 for 102612087	cit-r.1 for 102614233	cit-r.1 for 102626942	gma-u.5 for 100804548	gma-u.5 for 100805759	gma-u.5 for 100806393	vvi-u.5 for 104881366	vvi-u.5 for 100264980	vvi-u.5 for 100242382	ppo-u.5 for 7493515	ppo-u.5 for 7461593	ppo-u.5 for 7453751	mtr-u.5 for 25488303	mtr-u.5 for 11443585	mtr-u.5 for 11436711	sly-u.5 for 101268806	sly-u.5 for 101267354	sly-u.5 for 101256262	sot-r.1 for 107063218	sot-r.1 for 102583829	sot-r.1 for 102604313	nta-r.1 for 107830019	nta-r.1 for 107758940	nta-r.1 for 107813930	osa-u.5 for 4325688	osa-u.5 for 4328487	osa-u.5 for 107276160	zma-u.5 for 100283672	zma-u.5 for 100285136	zma-u.5 for 100286080	tae-r.2 for 123105718	tae-r.2 for 123136584	hvu-r.1 for 123404800	hvu-r.1 for 123453101	sbi-r.1 for 8071013	sbi-r.1 for 8079711	bdi-r.1 for 100822237	bdi-r.1 for 100825599

Ortholog

Ortholog ID: 166

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

protein SAR DEFICIENT 1

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

Calmodulin-binding protein

protein SAR DEFICIENT 1

calmodulin-binding protein 60 D

calmodulin-binding protein 60 C

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 C

protein SAR DEFICIENT 1-like

calmodulin-binding protein 60 A

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 B

calmodulin-binding protein 60 A

calmodulin-binding protein 60 C

calmodulin-binding protein 60 A

calmodulin-binding protein 60 B

protein SAR DEFICIENT 1

calmodulin-binding protein 60 D

protein SAR DEFICIENT 1-like

calmodulin-binding protein 60 B

calmodulin-binding protein 60 A

protein SAR DEFICIENT 1-like

protein SAR DEFICIENT 1

calmodulin-binding protein 60 B

protein SAR DEFICIENT 1

calmodulin-binding protein 60 C

calmodulin-binding protein 60 D

calmodulin binding protein

Protein SAR DEFICIENT 1

Calmodulin-binding protein 60 C

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D-like

calmodulin-binding protein 60 B-like

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	6
vvi04016	MAPK signaling pathway - plant	4
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2
ppo04626	Plant-pathogen interaction	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00905	Brassinosteroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00330	Arginine and proline metabolism	2
sbi00410	beta-Alanine metabolism	2
sbi00770	Pantothenate and CoA biosynthesis	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107886116

107914004

107925256

816390

835862

828685

103831855

103863555

103874061

106397962

106346511

106430980

102612087

102629177

100812605

100816427

100798493

100264980

100255354

100256775

7453751

7478912

18097458

11421955

120575779

25496840

101268806

101256262

101255950

102583829

102604313

102585109

107830019

107831052

107800838

4325688

4328487

4332576

100283672

103649824

103653644

123076922

123404800

123406352

8079393

8066356

100822237

100840855

100835614

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121224441 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121224441 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**