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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121227892   E3 ubiquitin-protein ligase RMA3 
 ath-u.5   RMA1   RING membrane-anchor 1 
 ath-u.5   RMA3   RING membrane-anchor 3 
 ath-u.5   RMA2   RING membrane-anchor 2 
 gma-u.5   100817526   E3 ubiquitin-protein ligase RMA1-like 
 gma-u.5   100816864   E3 ubiquitin-protein ligase RMA1H1 
 gma-u.5   100807729   E3 ubiquitin-protein ligase RMA1H1-like 
 vvi-u.5   100265502   E3 ubiquitin-protein ligase RMA1H1-like 
 vvi-u.5   100255559   E3 ubiquitin-protein ligase RMA1H1 
 vvi-u.5   100257429   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   7477410   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   7460826   E3 ubiquitin-protein ligase RMA3 
 ppo-u.5   18095597   E3 ubiquitin-protein ligase RMA3 
 mtr-u.5   25493170   E3 ubiquitin-protein ligase RMA3 
 mtr-u.5   25487645   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25487651   E3 ubiquitin-protein ligase RMA1H1 
 sly-u.5   101243642   E3 ubiquitin-protein ligase RMA3-like 
 sly-u.5   101248949   E3 ubiquitin-protein ligase RMA3 
 sly-u.5   101253976   E3 ubiquitin-protein ligase RMA1H1-like 
 osa-u.5   4330106   E3 ubiquitin-protein ligase RMA2 
 osa-u.5   4336483   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   103627470   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   100286356   uncharacterized LOC100286356 
 zma-u.5   100192071   uncharacterized LOC100192071 

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Top 50 coexpressed genes to 121227892 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121227892 (ghi-r.1 coexpression data)

CoexMap"121227892"


ghiLOC121227892 | Entrez gene ID : 121227892    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04141 [list] [network] Protein processing in endoplasmic reticulum (593 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (782 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (1428 genes)  IEA  
GO MF
GO:0044390 [list] [network] ubiquitin-like protein conjugating enzyme binding  (82 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (4664 genes)  IEA  
Protein XP_040966746.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 1,  golg 1,  chlo 1,  extr 1,  vacu 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_040966746.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040966746.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121227892
ath-u.5
for
RMA1
ath-u.5
for
RMA3
ath-u.5
for
RMA2
gma-u.5
for
100817526
gma-u.5
for
100816864
gma-u.5
for
100807729
vvi-u.5
for
100265502
vvi-u.5
for
100255559
vvi-u.5
for
100257429
ppo-u.5
for
7477410
ppo-u.5
for
7460826
ppo-u.5
for
18095597
mtr-u.5
for
25493170
mtr-u.5
for
25487645
mtr-u.5
for
25487651
sly-u.5
for
101243642
sly-u.5
for
101248949
sly-u.5
for
101253976
osa-u.5
for
4330106
osa-u.5
for
4336483
zma-u.5
for
103627470
zma-u.5
for
100286356
zma-u.5
for
100192071


Ortholog ID: 734
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107928842 LOC107925295 RMA2 RMA1 LOC103867947 LOC103867189 LOC106435119 LOC106407488 LOC102620748 LOC102629340 LOC100779793 LOC100807729 LOC100265502 LOC100255559 LOC18104643 LOC18108562 LOC25487645 LOC25487651 LOC101262152 LOC101253976 LOC102600465 LOC102579222 LOC107800076 LOC107787283 LOC4336483 LOC4330106 LOC100192071 LOC100286356 LOC123127837 LOC123189813 LOC123405483 LOC123427323 LOC8074809 LOC8082878 LOC100835684 LOC106865399
Function* E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 RING membrane-anchor 2 RING membrane-anchor 1 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA3-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA2 uncharacterized LOC100192071 uncharacterized LOC100286356 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 5
sot00996 Biosynthesis of various alkaloids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 5
nta00620 Pyruvate metabolism 5
nta01200 Carbon metabolism 5
nta00020 Citrate cycle (TCA cycle) 4
nta00260 Glycine, serine and threonine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00030 Pentose phosphate pathway 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00562 Inositol phosphate metabolism 2
bdi04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107928842 107925295 828942 825654 103867947 103867189 106435119 106407488 102620748 102629340 100779793 100807729 100265502 100255559 18104643 18108562 25487645 25487651 101262152 101253976 102600465 102579222 107800076 107787283 4336483 4330106 100192071 100286356 123127837 123189813 123405483 123427323 8074809 8082878 100835684 106865399
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