ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123072840	respirasome Complex Assembly Factor 1
tae-r.2	123179959	respirasome Complex Assembly Factor 1
tae-r.2	123081001	respirasome Complex Assembly Factor 1
tae-r.2	123063690	respirasome Complex Assembly Factor 1
hvu-r.1	123441768	respirasome Complex Assembly Factor 1-like
hvu-r.1	123445701	respirasome Complex Assembly Factor 1-like
bdi-r.1	100835823	uncharacterized protein C20orf24 homolog
bdi-r.1	100824385	uncharacterized protein C20orf24 homolog
osa-u.5	4337590	uncharacterized protein RAB5IF homolog
zma-u.5	100282927	RAB5-interacting protein
sbi-r.1	8067320	uncharacterized protein C20orf24 homolog
ath-u.5	AT2G29020	Rab5-interacting family protein
ath-u.5	AT5G59410	Rab5-interacting family protein
gma-u.5	100808602	respirasome Complex Assembly Factor 1
gma-u.5	100526939	uncharacterized LOC100526939
sly-u.5	101247435	uncharacterized LOC101247435
bra-r.6	103864935	uncharacterized protein RAB5IF homolog
bra-r.6	103850091	uncharacterized protein RAB5IF homolog
vvi-u.5	100246826	uncharacterized LOC100246826
ppo-u.5	7481532	uncharacterized LOC7481532
ppo-u.5	7465107	uncharacterized LOC7465107
mtr-u.5	11418083	respirasome Complex Assembly Factor 1
ghi-r.1	107959122	respirasome Complex Assembly Factor 1
ghi-r.1	121229306	respirasome Complex Assembly Factor 1
bna-r.1	BNAC04G40200D	respirasome Complex Assembly Factor 1
bna-r.1	BNAA07G14260D	respirasome Complex Assembly Factor 1
bna-r.1	BNAA04G16800D	respirasome Complex Assembly Factor 1
sot-r.1	102597870	uncharacterized protein C20orf24 homolog
cit-r.1	102622315	uncharacterized LOC102622315
nta-r.1	107824539	uncharacterized LOC107824539
nta-r.1	107832768	uncharacterized LOC107832768
cre-r.1	CHLRE_08g376000v5	uncharacterized protein

Top 50 coexpressed genes to 123072840 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123072840 (tae-r.2 coexpression data)

CoexMap"123072840"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0097250 [list] [network] mitochondrial respirasome assembly

(7 genes)

IEA

GO CC

GO MF

Protein

XP_044352440.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 1, nucl 1, cyto 1, vacu 1, cysk_nucl 1, nucl_plas 1

(predict for XP_044352440.1)

Subcellular
localization
TargetP

mito 5

(predict for XP_044352440.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123072840	tae-r.2 for 123179959	tae-r.2 for 123081001	tae-r.2 for 123063690	hvu-r.1 for 123441768	hvu-r.1 for 123445701	bdi-r.1 for 100835823	bdi-r.1 for 100824385	osa-u.5 for 4337590	zma-u.5 for 100282927	sbi-r.1 for 8067320	ath-u.5 for AT2G29020	ath-u.5 for AT5G59410	gma-u.5 for 100808602	gma-u.5 for 100526939	sly-u.5 for 101247435	bra-r.6 for 103864935	bra-r.6 for 103850091	vvi-u.5 for 100246826	ppo-u.5 for 7481532	ppo-u.5 for 7465107	mtr-u.5 for 11418083	ghi-r.1 for 107959122	ghi-r.1 for 121229306	bna-r.1 for BNAC04G40200D	bna-r.1 for BNAA07G14260D	bna-r.1 for BNAA04G16800D	sot-r.1 for 102597870	cit-r.1 for 102622315	nta-r.1 for 107824539	nta-r.1 for 107832768	cre-r.1 for CHLRE_08g376000v5

Ortholog

Ortholog ID: 4876

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

respirasome Complex Assembly Factor 1

respirasome Complex Assembly Factor 1-like

uncharacterized protein C20orf24 homolog

uncharacterized protein RAB5IF homolog

RAB5-interacting protein

uncharacterized protein C20orf24 homolog

Rab5-interacting family protein

respirasome Complex Assembly Factor 1

uncharacterized LOC100526939

uncharacterized LOC101247435

uncharacterized protein RAB5IF homolog

uncharacterized LOC100246826

uncharacterized LOC7481532

uncharacterized LOC7465107

respirasome Complex Assembly Factor 1

uncharacterized protein C20orf24 homolog

uncharacterized LOC102622315

uncharacterized LOC107824539

uncharacterized LOC107832768

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03040	Spliceosome	2
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03250	Viral life cycle - HIV-1	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03060	Protein export	4
osa04141	Protein processing in endoplasmic reticulum	3
osa04145	Phagosome	2
osa00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma00510	N-Glycan biosynthesis	3
zma00513	Various types of N-glycan biosynthesis	3
zma03060	Protein export	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00020	Citrate cycle (TCA cycle)	2
sbi00270	Cysteine and methionine metabolism	2
sbi00566	Sulfoquinovose metabolism	2
sbi00620	Pyruvate metabolism	2
sbi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	6
gma00020	Citrate cycle (TCA cycle)	5
gma00620	Pyruvate metabolism	4
gma00010	Glycolysis / Gluconeogenesis	3
gma00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra04016	MAPK signaling pathway - plant	2
bra04070	Phosphatidylinositol signaling system	2
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	3
ppo00541	Biosynthesis of various nucleotide sugars	2
ppo01250	Biosynthesis of nucleotide sugars	2
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2
mtr04145	Phagosome	2
mtr04148	Efferocytosis	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00190	Oxidative phosphorylation	4
sot04145	Phagosome	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	3
cit00513	Various types of N-glycan biosynthesis	3
cit04141	Protein processing in endoplasmic reticulum	3
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00195	Photosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

123072840

123081001

123104262

123441768

123445701

100835823

100824385

4337590

100282927

8067320

817451

836060

100808602

100526939

101247435

103864935

103850091

100246826

7481532

7465107

11418083

107950149

107906561

106391219

106446909

106421975

102597870

102622315

107824539

107832768

5719944

The preparation time of this page was 1.4 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	1	1	1	2	2	1	2	1	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123072840 (tae-r.2 coexpression data)

Top 50 enrichment test to 123072840 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**