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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123094950   polyadenylate-binding protein 4-like 
 zma-u.5   103639307   polyadenylate-binding protein 7 
 ath-u.5   PAB7   poly(A) binding protein 7 
 gma-u.5   100807057   polyadenylate-binding protein 7 
 gma-u.5   100804671   polyadenylate-binding protein 7 
 gma-u.5   100798828   polyadenylate-binding protein 7 
 sly-u.5   101248632   polyadenylate-binding protein 7-like 
 sly-u.5   101266448   polyadenylate-binding protein 7 
 vvi-u.5   100267544   polyadenylate-binding protein 7 
 ghi-r.1   107899510   polyadenylate-binding protein 7 
 ghi-r.1   121223563   polyadenylate-binding protein 7 
 ghi-r.1   107931523   polyadenylate-binding protein 7 
 nta-r.1   107779957   polyadenylate-binding protein 7-like 

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Top 50 coexpressed genes to 123094950 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123094950 (tae-r.2 coexpression data)

CoexMap"123097877"


taeLOC123097877 | Entrez gene ID : 123097877    
Species tae zma ath gma sly vvi ghi nta osa bdi sot bra cit ppo mtr hvu sbi cre bna
Paralog 1 1 1 3 2 1 3 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03015 [list] [network] mRNA surveillance pathway (388 genes)
taes03018 [list] [network] RNA degradation (374 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044375660.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_044375660.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044375660.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123094950
zma-u.5
for
103639307
ath-u.5
for
PAB7
gma-u.5
for
100807057
gma-u.5
for
100804671
gma-u.5
for
100798828
sly-u.5
for
101248632
sly-u.5
for
101266448
vvi-u.5
for
100267544
ghi-r.1
for
107899510
ghi-r.1
for
121223563
ghi-r.1
for
107931523
nta-r.1
for
107779957


Ortholog ID: 7947
Species tae zma ath gma gma gma sly sly vvi ghi ghi ghi nta
Symbol LOC123094950 LOC103639307 PAB7 LOC100804671 LOC100798828 LOC100779547 LOC101248632 LOC101266448 LOC100267544 LOC107899510 LOC107931523 LOC107901740 LOC107759676
Function* polyadenylate-binding protein 4-like polyadenylate-binding protein 7 poly(A) binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7-like polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 3
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 3
sly01200 Carbon metabolism 3
sly03018 RNA degradation 3
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 3
vvi03018 RNA degradation 2
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
ghi00073 Cutin, suberine and wax biosynthesis 2
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta04146 Peroxisome 2
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123094950 103639307 818238 100804671 100798828 100779547 101248632 101266448 100267544 107899510 107931523 107901740 107759676
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