ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123104075	translation initiation factor IF-2
osa-u.5	4345901	uncharacterized LOC4345901
osa-u.5	4347363	uncharacterized LOC4347363
zma-u.5	103641415	cleavage and polyadenylation specificity factor subunit 6
zma-u.5	100501712	uncharacterized LOC100501712
zma-u.5	103641426	cleavage and polyadenylation specificity factor subunit 6
ath-u.5	AT5G55670	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G13190	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100813748	uncharacterized PE-PGRS family protein PE_PGRS46
gma-u.5	100813702	cleavage and polyadenylation specificity factor subunit 6
gma-u.5	100811056	uncharacterized PE-PGRS family protein PE_PGRS46
sly-u.5	104649492	uncharacterized LOC104649492
sly-u.5	101251795	uncharacterized LOC101251795
sly-u.5	101251491	uncharacterized LOC101251491
vvi-u.5	100268141	uncharacterized LOC100268141
vvi-u.5	100246290	uncharacterized LOC100246290
ppo-u.5	7473194	uncharacterized LOC7473194
ppo-u.5	7460729	uncharacterized LOC7460729
mtr-u.5	25489149	uncharacterized PE-PGRS family protein PE_PGRS54
mtr-u.5	25489148	uncharacterized PE-PGRS family protein PE_PGRS54

Top 50 coexpressed genes to 123104075 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123104075 (tae-r.2 coexpression data)

CoexMap"123104075"

[Cytoscape]

Annotation

functional annotation

KEGG

taes03015 [list] [network] mRNA surveillance pathway (388 genes)

taes03250 [list] [network] Viral life cycle - HIV-1 (104 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(4004 genes)

IEA

Protein

XP_044381731.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for XP_044381731.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044381731.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123104075	osa-u.5 for 4345901	osa-u.5 for 4347363	zma-u.5 for 103641415	zma-u.5 for 100501712	zma-u.5 for 103641426	ath-u.5 for AT5G55670	ath-u.5 for AT1G13190	gma-u.5 for 100813748	gma-u.5 for 100813702	gma-u.5 for 100811056	sly-u.5 for 104649492	sly-u.5 for 101251795	sly-u.5 for 101251491	vvi-u.5 for 100268141	vvi-u.5 for 100246290	ppo-u.5 for 7473194	ppo-u.5 for 7460729	mtr-u.5 for 25489149	mtr-u.5 for 25489148

Ortholog

Ortholog ID: 2432

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

translation initiation factor IF-2

cleavage and polyadenylation specificity factor subunit 6

translation initiation factor IF-2-like

cleavage and polyadenylation specificity factor subunit 6

RNA-binding protein cabeza

uncharacterized LOC4345901

uncharacterized LOC4347363

cleavage and polyadenylation specificity factor subunit 6

translation initiation factor IF-2

cleavage and polyadenylation specificity factor subunit 6

RNA-binding (RRM/RBD/RNP motifs) family protein

cleavage and polyadenylation specificity factor subunit 6

uncharacterized PE-PGRS family protein PE_PGRS46

uncharacterized LOC104649492

uncharacterized LOC101251182

cleavage and polyadenylation specificity factor subunit 6

cleavage and polyadenylation specificity factor subunit CG7185

uncharacterized LOC100246290

uncharacterized LOC100268141

uncharacterized LOC7473194

uncharacterized LOC7460729

uncharacterized PE-PGRS family protein PE_PGRS54

cleavage and polyadenylation specificity factor subunit 6

uncharacterized PE-PGRS family protein PE_PGRS54

cleavage and polyadenylation specificity factor subunit 6-like

cleavage and polyadenylation specificity factor subunit 6

uncharacterized LOC102628156

uncharacterized LOC102628557

uncharacterized LOC107759692

uncharacterized LOC107801425

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae03250	Viral life cycle - HIV-1	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae03250	Viral life cycle - HIV-1	3
tae04136	Autophagy - other	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	8
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03015	mRNA surveillance pathway	3
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	9
zma03015	mRNA surveillance pathway	4
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03040	Spliceosome	3
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03015	mRNA surveillance pathway	2
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	5
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	4
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	8
gma03015	mRNA surveillance pathway	6
gma03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	6
gma03040	Spliceosome	6
gma03250	Viral life cycle - HIV-1	4
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2
sly04075	Plant hormone signal transduction	2
sly00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03015	mRNA surveillance pathway	4
sly03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5
vvi03015	mRNA surveillance pathway	3
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03015	mRNA surveillance pathway	3
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	3
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03015	mRNA surveillance pathway	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna03250	Viral life cycle - HIV-1	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna03250	Viral life cycle - HIV-1	6
bna04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7

Expression

Expression pattern

Entrez Gene ID^*

123104075

123112299

123399127

100827188

100838039

4345901

4347363

103641415

103641426

8055363

8067028

835661

837877

100782869

100811056

104649492

101251182

103856971

103851867

100246290

100268141

7473194

7460729

25489148

25489149

107898647

121209632

106389765

106371392

102583609

102628156

102628557

107759692

107801425

66054544

The preparation time of this page was 0.1 [sec].


Species	tae	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre
Paralog	1	2	3	2	3	3	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123104075 (tae-r.2 coexpression data)

Top 50 enrichment test to 123104075 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**