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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123127993   E3 ubiquitin ligase PARAQUAT TOLERANCE 3 
 osa-u.5   4348695   E3 ubiquitin ligase PQT3-like 
 zma-u.5   103643542   E3 ubiquitin ligase PQT3-like 
 ath-u.5   AT4G17410   DWNN domain, a CCHC-type zinc finger 
 ath-u.5   AT5G47430   DWNN domain, a CCHC-type zinc finger 
 gma-u.5   100808703   E3 ubiquitin ligase PQT3-like 
 gma-u.5   100798536   E3 ubiquitin ligase PQT3-like 
 sly-u.5   101251343   E3 ubiquitin ligase PQT3-like 
 sly-u.5   101246898   E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like 
 vvi-u.5   100854867   E3 ubiquitin ligase PQT3-like 
 ppo-u.5   18094602   E3 ubiquitin ligase PQT3-like 
 ppo-u.5   7471635   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11406899   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11411312   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11424069   E3 ubiquitin ligase PQT3-like 

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Top 50 coexpressed genes to 123127993 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123127993 (tae-r.2 coexpression data)

CoexMap"123127993"


taeLOC123127993 | Entrez gene ID : 123127993    
Species tae osa zma ath gma sly vvi ppo mtr hvu cit bra ghi sbi bdi nta bna cre sot
Paralog 1 1 1 2 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006397 [list] [network] mRNA processing  (616 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (881 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (1642 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (667 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (2838 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (11810 genes)  IEA  
Protein XP_044403813.1 [sequence] [blastp]
XP_044403815.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_044403813.1)
nucl 9  (predict for XP_044403815.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044403813.1)
other 8  (predict for XP_044403815.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123127993
osa-u.5
for
4348695
zma-u.5
for
103643542
ath-u.5
for
AT4G17410
ath-u.5
for
AT5G47430
gma-u.5
for
100808703
gma-u.5
for
100798536
sly-u.5
for
101251343
sly-u.5
for
101246898
vvi-u.5
for
100854867
ppo-u.5
for
18094602
ppo-u.5
for
7471635
mtr-u.5
for
11406899
mtr-u.5
for
11411312
mtr-u.5
for
11424069


Ortholog ID: 3823
Species tae tae hvu bdi bdi osa zma sbi ath ath gma gma sly sly bra bra vvi ppo ppo mtr mtr ghi bna bna cit nta cre
Symbol LOC123137634 LOC123145090 LOC123404523 LOC100842763 LOC100823388 LOC4348695 LOC103643542 LOC8059426 AT4G17410 AT5G47430 LOC100798536 LOC100808703 LOC101251343 LOC101246898 LOC103868196 LOC103839528 LOC100854867 LOC18094602 LOC7471635 LOC11430926 LOC11406899 LOC107929373 LOC106432054 LOC106425442 LOC102622566 LOC107761502 CHLRE_12g543303v5
Function* E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like DWNN domain, a CCHC-type zinc finger DWNN domain, a CCHC-type zinc finger E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123137634 123145090 123404523 100842763 100823388 4348695 103643542 8059426 827452 834790 100798536 100808703 101251343 101246898 103868196 103839528 100854867 18094602 7471635 11430926 11406899 107929373 106432054 106425442 102622566 107761502 5719537
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