ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123137013	far upstream element-binding protein 2
tae-r.2	123127387	far upstream element-binding protein 2
tae-r.2	123084267	uncharacterized LOC123084267
hvu-r.1	123411206	far upstream element-binding protein 1-like
bdi-r.1	100834117	far upstream element-binding protein 2
bdi-r.1	100835547	far upstream element-binding protein 1
osa-u.5	9266838	uncharacterized LOC9266838
osa-u.5	4328770	uncharacterized LOC4328770
zma-u.5	100279814	uncharacterized LOC100279814
zma-u.5	100273619	KH domain-containing protein
zma-u.5	100193964	uncharacterized LOC100193964
sbi-r.1	8059182	far upstream element-binding protein 1
sbi-r.1	110437096	far upstream element-binding protein 1-like
sbi-r.1	8073784	far upstream element-binding protein 2
ath-u.5	AT2G25970	KH domain-containing protein
ath-u.5	AT4G10070	KH domain-containing protein
ath-u.5	AT1G33680	KH domain-containing protein
gma-u.5	100786134	far upstream element-binding protein 1
gma-u.5	100800173	far upstream element-binding protein 2
gma-u.5	100813135	far upstream element-binding protein 1
sly-u.5	101264287	uncharacterized LOC101264287
sly-u.5	101267010	uncharacterized LOC101267010
bra-r.6	103842167	far upstream element-binding protein 1
bra-r.6	103864711	far upstream element-binding protein 1
bra-r.6	103840055	far upstream element-binding protein 2
vvi-u.5	100253453	uncharacterized LOC100253453
vvi-u.5	100259454	uncharacterized LOC100259454
ppo-u.5	7455252	uncharacterized LOC7455252
ppo-u.5	7463740	uncharacterized LOC7463740
ppo-u.5	18104348	uncharacterized LOC18104348
mtr-u.5	11417818	splicing factor 3A subunit 2
mtr-u.5	11439962	far upstream element-binding protein 2
mtr-u.5	11432333	far upstream element-binding protein 1
ghi-r.1	107902822	far upstream element-binding protein 1
ghi-r.1	107914021	far upstream element-binding protein 2
ghi-r.1	107919846	far upstream element-binding protein 2
bna-r.1	106421155	far upstream element-binding protein 3
bna-r.1	106368546	far upstream element-binding protein 1
bna-r.1	106400940	far upstream element-binding protein 1-like
sot-r.1	102595397	far upstream element-binding protein 2-like
sot-r.1	102583099	far upstream element-binding protein 2
sot-r.1	102578344	far upstream element-binding protein 2
cit-r.1	102620563	uncharacterized LOC102620563
cit-r.1	102609390	uncharacterized LOC102609390
nta-r.1	107774458	uncharacterized LOC107774458
nta-r.1	107779386	uncharacterized LOC107779386
nta-r.1	107779634	uncharacterized LOC107779634
cre-r.1	CHLRE_06g250800v5	uncharacterized protein

Top 50 coexpressed genes to 123137013 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123137013 (tae-r.2 coexpression data)

CoexMap"123129586"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(4004 genes)

IEA

Protein

XP_044405628.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo 3, nucl 2

(predict for XP_044405628.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_044405628.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123137013	tae-r.2 for 123127387	tae-r.2 for 123084267	hvu-r.1 for 123411206	bdi-r.1 for 100834117	bdi-r.1 for 100835547	osa-u.5 for 9266838	osa-u.5 for 4328770	zma-u.5 for 100279814	zma-u.5 for 100273619	zma-u.5 for 100193964	sbi-r.1 for 8059182	sbi-r.1 for 110437096	sbi-r.1 for 8073784	ath-u.5 for AT2G25970	ath-u.5 for AT4G10070	ath-u.5 for AT1G33680	gma-u.5 for 100786134	gma-u.5 for 100800173	gma-u.5 for 100813135	sly-u.5 for 101264287	sly-u.5 for 101267010	bra-r.6 for 103842167	bra-r.6 for 103864711	bra-r.6 for 103840055	vvi-u.5 for 100253453	vvi-u.5 for 100259454	ppo-u.5 for 7455252	ppo-u.5 for 7463740	ppo-u.5 for 18104348	mtr-u.5 for 11417818	mtr-u.5 for 11439962	mtr-u.5 for 11432333	ghi-r.1 for 107902822	ghi-r.1 for 107914021	ghi-r.1 for 107919846	bna-r.1 for 106421155	bna-r.1 for 106368546	bna-r.1 for 106400940	sot-r.1 for 102595397	sot-r.1 for 102583099	sot-r.1 for 102578344	cit-r.1 for 102620563	cit-r.1 for 102609390	nta-r.1 for 107774458	nta-r.1 for 107779386	nta-r.1 for 107779634	cre-r.1 for CHLRE_06g250800v5

Ortholog

Ortholog ID: 1531

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1-like

far upstream element-binding protein 2

far upstream element-binding protein 1

uncharacterized LOC9266838

uncharacterized LOC4328770

uncharacterized LOC100279814

uncharacterized LOC100193964

KH domain-containing protein

far upstream element-binding protein 1

far upstream element-binding protein 1-like

far upstream element-binding protein 2

KH domain-containing protein

far upstream element-binding protein 1

uncharacterized LOC101264287

uncharacterized LOC101267010

far upstream element-binding protein 1

far upstream element-binding protein 2

uncharacterized LOC100253453

uncharacterized LOC100259454

uncharacterized LOC7455252

uncharacterized LOC7463740

uncharacterized LOC18104348

far upstream element-binding protein 2

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1

far upstream element-binding protein 1-like

far upstream element-binding protein 2-like

far upstream element-binding protein 2

uncharacterized LOC102620563

uncharacterized LOC102609390

uncharacterized LOC107779386

uncharacterized LOC107779634

uncharacterized LOC107801401

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03410	Base excision repair	2
sbi03040	Spliceosome	2
sbi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	3
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	3
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03018	RNA degradation	2
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03082	ATP-dependent chromatin remodeling	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo00970	Aminoacyl-tRNA biosynthesis	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	3
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03018	RNA degradation	3
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11

Expression

Expression pattern

Entrez Gene ID^*

123147603

123158361

123144471

123411206

123396419

100834117

100835547

9266838

4328770

100279814

100193964

100191655

8059182

110437096

8073784

817137

826598

840259

100813135

100797476

100782717

101264287

101267010

103842167

103864711

103840055

100253453

100259454

7455252

7463740

18104348

11439962

11432333

11423244

107914021

107961657

107895341

106368546

106413676

106448684

102595397

102583099

102578344

102620563

102609390

107779386

107779634

107801401

5722206

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	2	2	3	3	3	3	2	3	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123137013 (tae-r.2 coexpression data)

Top 50 enrichment test to 123137013 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**