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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123167348   transcription factor bHLH112 
 osa-u.5   4327040   transcription factor bHLH123 
 osa-u.5   4339235   transcription factor bHLH68 
 zma-u.5   100277655   uncharacterized LOC100277655 
 zma-u.5   100384230   uncharacterized LOC100384230 
 ath-u.5   AT3G20640   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G61660   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100784084   transcription factor bHLH112 
 gma-u.5   100794682   transcription factor bHLH112 
 gma-u.5   100797286   transcription factor bHLH123 
 sly-u.5   101263532   transcription factor bHLH123 
 sly-u.5   101264865   transcription factor bHLH123-like 
 vvi-u.5   100264251   transcription factor bHLH112 
 vvi-u.5   100267585   transcription factor bHLH123 
 ppo-u.5   7470906   transcription factor bHLH123 
 ppo-u.5   18097442   transcription factor bHLH112 
 ppo-u.5   7497032   transcription factor bHLH112 
 mtr-u.5   25502666   transcription factor bHLH123 
 mtr-u.5   11407905   transcription factor bHLH123 
 mtr-u.5   11428544   transcription factor bHLH112 

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Top 50 coexpressed genes to 123167348 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123167348 (tae-r.2 coexpression data)

CoexMap"123167348"


taeLOC123167348 | Entrez gene ID : 123167348    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 2 2 2 3 2 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1094 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (462 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (643 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (2051 genes)  IEA  
Protein XP_044441161.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_044441161.1)
Subcellular
localization
TargetP
other 6  (predict for XP_044441161.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123167348
osa-u.5
for
4327040
osa-u.5
for
4339235
zma-u.5
for
100277655
zma-u.5
for
100384230
ath-u.5
for
AT3G20640
ath-u.5
for
AT1G61660
gma-u.5
for
100784084
gma-u.5
for
100794682
gma-u.5
for
100797286
sly-u.5
for
101263532
sly-u.5
for
101264865
vvi-u.5
for
100264251
vvi-u.5
for
100267585
ppo-u.5
for
7470906
ppo-u.5
for
18097442
ppo-u.5
for
7497032
mtr-u.5
for
25502666
mtr-u.5
for
11407905
mtr-u.5
for
11428544


Ortholog ID: 1346
Species tae hvu hvu bdi bdi osa osa zma zma sbi sbi ath ath gma sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta
Symbol LOC123167348 LOC123440342 LOC123413207 LOC100822020 LOC100841119 LOC4339235 LOC4327040 LOC100277655 LOC100384230 LOC8067473 LOC110433436 AT3G20640 AT1G61660 LOC106795829 LOC101268539 LOC103830854 LOC103869298 LOC100264251 LOC100267585 LOC18097442 LOC7470906 LOC11407905 LOC11428544 LOC107903513 LOC107962157 LOC106346043 LOC106376785 LOC102581143 LOC102601454 LOC102615855 LOC102619495 LOC107763722 LOC107806502
Function* transcription factor bHLH112 uncharacterized LOC123440342 transcription factor bHLH111-like transcription factor bHLH123 transcription factor bHLH123 transcription factor bHLH68 transcription factor bHLH123 uncharacterized LOC100277655 uncharacterized LOC100384230 transcription factor UNE12 transcription factor bHLH112-like basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein uncharacterized LOC106795829 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112-like transcription factor bHLH123-like transcription factor bHLH123-like transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112-like transcription factor bHLH123-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04016 MAPK signaling pathway - plant 2
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123167348 123440342 123413207 100822020 100841119 4339235 4327040 100277655 100384230 8067473 110433436 821611 842462 106795829 101268539 103830854 103869298 100264251 100267585 18097442 7470906 11407905 11428544 107903513 107962157 106346043 106376785 102581143 102601454 102615855 102619495 107763722 107806502
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