ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123182335	sorting and assembly machinery component 50 homolog A
tae-r.2	123136725	sorting and assembly machinery component 50 homolog A
tae-r.2	123051532	sorting and assembly machinery component 50 homolog A
tae-r.2	123059821	sorting and assembly machinery component 50 homolog A
hvu-r.1	123444912	sorting and assembly machinery component 50 homolog A-like
hvu-r.1	123395662	SAM50-like protein SPAC17C9.06
bdi-r.1	100823101	SAM50-like protein SPAC17C9.06
bdi-r.1	100825093	sorting and assembly machinery component 50 homolog A
osa-u.5	4351261	uncharacterized LOC4351261
osa-u.5	4339073	uncharacterized LOC4339073
zma-u.5	100280941	uncharacterized LOC100280941
zma-u.5	103650438	uncharacterized LOC103650438
zma-u.5	103640648	uncharacterized LOC103640648
sbi-r.1	8079967	SAM50-like protein SPAC17C9.06
sbi-r.1	8085419	sorting and assembly machinery component 50 homolog
sbi-r.1	8070321	uncharacterized LOC8070321
ath-u.5	AT3G11070	Outer membrane OMP85 family protein
ath-u.5	AT5G05520	Outer membrane OMP85 family protein
gma-u.5	100802876	sorting and assembly machinery component 50 homolog
gma-u.5	100804873	sorting and assembly machinery component 50 homolog
gma-u.5	100776589	sorting and assembly machinery component 50 homolog
sly-u.5	101261115	uncharacterized LOC101261115
bra-r.6	103859376	sorting and assembly machinery component 50 homolog B
bra-r.6	103870377	uncharacterized LOC103870377
bra-r.6	103846901	sorting and assembly machinery component 50 homolog B
vvi-u.5	100258670	uncharacterized LOC100258670
ppo-u.5	7462086	uncharacterized LOC7462086
ppo-u.5	7474418	uncharacterized LOC7474418
mtr-u.5	11406688	sorting and assembly machinery component 50 homolog B
mtr-u.5	11424986	sorting and assembly machinery component 50 homolog B
ghi-r.1	107900525	sorting and assembly machinery component 50 homolog
ghi-r.1	107917861	uncharacterized LOC107917861
ghi-r.1	121218571	sorting and assembly machinery component 50 homolog
bna-r.1	106440682	sorting and assembly machinery component 50 homolog B
bna-r.1	111215761	uncharacterized LOC111215761
bna-r.1	106439270	SAM50-like protein SPAC17C9.06
sot-r.1	102579885	sorting and assembly machinery component 50 homolog B-like
cit-r.1	102620586	uncharacterized LOC102620586
nta-r.1	107796356	uncharacterized LOC107796356
nta-r.1	107831129	uncharacterized LOC107831129
cre-r.1	CHLRE_06g308900v5	uncharacterized protein

Top 50 coexpressed genes to 123182335 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123182335 (tae-r.2 coexpression data)

CoexMap"123182335"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0019867 [list] [network] outer membrane

(513 genes)

IEA

GO MF

Protein

XP_044450792.1 [sequence] [blastp]
XP_044450793.1 [sequence] [blastp]
XP_044450794.1 [sequence] [blastp]
XP_044450795.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, nucl 1, cyto_mito 1, nucl_plas 1	(predict for XP_044450792.1)
cyto 4, nucl_plas 2, mito 2, plas 2, nucl 1, chlo_mito 1	(predict for XP_044450793.1)
cyto 4, nucl_plas 2, mito 2, plas 2, nucl 1, chlo_mito 1	(predict for XP_044450794.1)
cyto 4, nucl_plas 2, mito 2, plas 2, nucl 1, chlo_mito 1	(predict for XP_044450795.1)

Subcellular
localization
TargetP

other 5, mito 5	(predict for XP_044450792.1)
other 8	(predict for XP_044450793.1)
other 8	(predict for XP_044450794.1)
other 8	(predict for XP_044450795.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123182335	tae-r.2 for 123136725	tae-r.2 for 123051532	tae-r.2 for 123059821	hvu-r.1 for 123444912	hvu-r.1 for 123395662	bdi-r.1 for 100823101	bdi-r.1 for 100825093	osa-u.5 for 4351261	osa-u.5 for 4339073	zma-u.5 for 100280941	zma-u.5 for 103650438	zma-u.5 for 103640648	sbi-r.1 for 8079967	sbi-r.1 for 8085419	sbi-r.1 for 8070321	ath-u.5 for AT3G11070	ath-u.5 for AT5G05520	gma-u.5 for 100802876	gma-u.5 for 100804873	gma-u.5 for 100776589	sly-u.5 for 101261115	bra-r.6 for 103859376	bra-r.6 for 103870377	bra-r.6 for 103846901	vvi-u.5 for 100258670	ppo-u.5 for 7462086	ppo-u.5 for 7474418	mtr-u.5 for 11406688	mtr-u.5 for 11424986	ghi-r.1 for 107900525	ghi-r.1 for 107917861	ghi-r.1 for 121218571	bna-r.1 for 106440682	bna-r.1 for 111215761	bna-r.1 for 106439270	sot-r.1 for 102579885	cit-r.1 for 102620586	nta-r.1 for 107796356	nta-r.1 for 107831129	cre-r.1 for CHLRE_06g308900v5

Ortholog

Ortholog ID: 2632

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

sorting and assembly machinery component 50 homolog A

sorting and assembly machinery component 50 homolog A-like

SAM50-like protein SPAC17C9.06

sorting and assembly machinery component 50 homolog A

uncharacterized LOC4351261

uncharacterized LOC4339073

uncharacterized LOC100280941

uncharacterized LOC103640648

Outer membrane OMP85 family protein

SAM50-like protein SPAC17C9.06

sorting and assembly machinery component 50 homolog

uncharacterized LOC8070321

Outer membrane OMP85 family protein

sorting and assembly machinery component 50 homolog

uncharacterized LOC101261115

sorting and assembly machinery component 50 homolog B

uncharacterized LOC103870377

sorting and assembly machinery component 50 homolog B

uncharacterized LOC100258670

uncharacterized LOC7462086

uncharacterized LOC7474418

sorting and assembly machinery component 50 homolog B

sorting and assembly machinery component 50 homolog

uncharacterized LOC107917861

sorting and assembly machinery component 50 homolog

SAM50-like protein SPAC17C9.06

uncharacterized LOC106452548

sorting and assembly machinery component 50 homolog B-like

uncharacterized LOC102620586

uncharacterized LOC107796356

uncharacterized LOC107831129

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	6
bdi00020	Citrate cycle (TCA cycle)	5
bdi01210	2-Oxocarboxylic acid metabolism	3
bdi01230	Biosynthesis of amino acids	3
bdi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa00230	Purine metabolism	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	3
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2
zma00270	Cysteine and methionine metabolism	2
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	7
sbi03060	Protein export	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04145	Phagosome	2
sbi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3
ath03010	Ribosome	2
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	7
gma01200	Carbon metabolism	7
gma00010	Glycolysis / Gluconeogenesis	6
gma00061	Fatty acid biosynthesis	5
gma01212	Fatty acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	4
sly01200	Carbon metabolism	3
sly04142	Lysosome	2
sly04145	Phagosome	2
sly00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03010	Ribosome	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra01240	Biosynthesis of cofactors	2
bra03018	RNA degradation	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	7
vvi00190	Oxidative phosphorylation	5
vvi00020	Citrate cycle (TCA cycle)	4
vvi01200	Carbon metabolism	4
vvi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo00020	Citrate cycle (TCA cycle)	4
ppo01200	Carbon metabolism	4
ppo00270	Cysteine and methionine metabolism	3
ppo00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	5
ghi01230	Biosynthesis of amino acids	4
ghi00340	Histidine metabolism	2
ghi00260	Glycine, serine and threonine metabolism	2
ghi00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	6
ghi04075	Plant hormone signal transduction	2
ghi00630	Glyoxylate and dicarboxylate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi00340	Histidine metabolism	2
ghi00220	Arginine biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	5
bna03015	mRNA surveillance pathway	3
bna03040	Spliceosome	3
bna00970	Aminoacyl-tRNA biosynthesis	2
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	9
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

123051532

123059821

123444912

123395662

100823101

100825093

4351261

4339073

100280941

103640648

100216624

8079967

8085419

8070321

820278

830435

100802876

100804873

100785408

101261115

103859376

103870377

103846901

100258670

7462086

7474418

11406688

11424986

107900525

107917861

121218571

106439270

106452548

106419456

102579885

102620586

107796356

107831129

5716833

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	3	3	2	3	1	3	1	2	2	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123182335 (tae-r.2 coexpression data)

Top 50 enrichment test to 123182335 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**