ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125576428	glyoxylate/hydroxypyruvate reductase A HPR2-like
ath-u.5	AT1G79870	D-isomer specific 2-hydroxyacid dehydrogenase family protein
gma-u.5	100779623	hydroxyphenylpyruvate reductase-like protein
vvi-u.5	100251492	glyoxylate reductase-like
vvi-u.5	100246348	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like
ppo-u.5	7475070	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
ppo-u.5	7478399	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
mtr-u.5	11420389	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
mtr-u.5	11430677	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
mtr-u.5	25491400	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
sly-u.5	101263391	hydroxyphenylpyruvate reductase
sly-u.5	101244164	hydroxyphenylpyruvate reductase
osa-u.5	4327189	glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
zma-u.5	100283723	uncharacterized LOC100283723
zma-u.5	100281069	glyoxylate reductase

Top 50 coexpressed genes to 125576428 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125576428 (bna-r.1 coexpression data)

CoexMap"125576428"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00260 [list] [network] Glycine, serine and threonine metabolism (223 genes)

bna00630 [list] [network] Glyoxylate and dicarboxylate metabolism (260 genes)

bna01200 [list] [network] Carbon metabolism (888 genes)

GO BP

GO CC

GO:0005829 [list] [network] cytosol

(3196 genes)

IEA

GO MF

GO:0016618 [list] [network] hydroxypyruvate reductase [NAD(P)H] activity	(13 genes)	IEA
GO:0030267 [list] [network] glyoxylate reductase (NADPH) activity	(15 genes)	IEA
GO:0051287 [list] [network] NAD binding	(240 genes)	IEA

Protein

XP_048592446.1 [sequence] [blastp]
XP_048592447.1 [sequence] [blastp]
XP_048592448.1 [sequence] [blastp]
XP_048592449.1 [sequence] [blastp]
XP_048592450.1 [sequence] [blastp]
XP_048592451.1 [sequence] [blastp]
XP_048592452.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592446.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592447.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592448.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592449.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592450.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592451.1)
chlo 4, E.R. 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_048592452.1)

Subcellular
localization
TargetP

other 4, chlo 3	(predict for XP_048592446.1)
other 4, chlo 3	(predict for XP_048592447.1)
other 4, chlo 3	(predict for XP_048592448.1)
other 4, chlo 3	(predict for XP_048592449.1)
other 4, chlo 3	(predict for XP_048592450.1)
other 4, chlo 3	(predict for XP_048592451.1)
other 4, chlo 3	(predict for XP_048592452.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125576428	ath-u.5 for AT1G79870	gma-u.5 for 100779623	vvi-u.5 for 100251492	vvi-u.5 for 100246348	ppo-u.5 for 7475070	ppo-u.5 for 7478399	mtr-u.5 for 11420389	mtr-u.5 for 11430677	mtr-u.5 for 25491400	sly-u.5 for 101263391	sly-u.5 for 101244164	osa-u.5 for 4327189	zma-u.5 for 100283723	zma-u.5 for 100281069

Ortholog

Ortholog ID: 4481

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

glyoxylate/hydroxypyruvate reductase A HPR2

D-isomer specific 2-hydroxyacid dehydrogenase family protein

glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

hydroxyphenylpyruvate reductase

hydroxyphenylpyruvate reductase-like protein

glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like

glyoxylate reductase-like

glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

hydroxyphenylpyruvate reductase

hydroxyphenylpyruvate reductase-like

glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

hydroxyphenylpyruvate reductase

glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

uncharacterized LOC100283723

glyoxylate reductase

hydroxyphenylpyruvate reductase-like

hydroxyphenylpyruvate reductase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna01200	Carbon metabolism	4
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna01200	Carbon metabolism	4
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5
bra01200	Carbon metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00270	Cysteine and methionine metabolism	2
bra00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	3
ath00190	Oxidative phosphorylation	2
ath00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00350	Tyrosine metabolism	2
ghi00360	Phenylalanine metabolism	2
ghi00260	Glycine, serine and threonine metabolism	2
ghi00630	Glyoxylate and dicarboxylate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi00020	Citrate cycle (TCA cycle)	4
vvi00190	Oxidative phosphorylation	4
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01212	Fatty acid metabolism	4
ppo00062	Fatty acid elongation	3
ppo01040	Biosynthesis of unsaturated fatty acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	5
mtr04075	Plant hormone signal transduction	4
mtr00270	Cysteine and methionine metabolism	2
mtr00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	7
sot00020	Citrate cycle (TCA cycle)	6
sot01210	2-Oxocarboxylic acid metabolism	6
sot00010	Glycolysis / Gluconeogenesis	5
sot00620	Pyruvate metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	5
nta01200	Carbon metabolism	5
nta00620	Pyruvate metabolism	3
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	10
nta00630	Glyoxylate and dicarboxylate metabolism	8
nta04626	Plant-pathogen interaction	4
nta00620	Pyruvate metabolism	4
nta00710	Carbon fixation by Calvin cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	3
osa00010	Glycolysis / Gluconeogenesis	2
osa00020	Citrate cycle (TCA cycle)	2
osa01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	2
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	4
zma00061	Fatty acid biosynthesis	2
zma00780	Biotin metabolism	2
zma01212	Fatty acid metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00260	Glycine, serine and threonine metabolism	2
tae00630	Glyoxylate and dicarboxylate metabolism	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00220	Arginine biosynthesis	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

106415908

106353346

103830405

103832507

844326

107941083

107906523

102615944

100779623

100246348

100251492

7475070

7478399

11430677

25491400

101244164

101263391

102590277

107815507

107815302

4327189

100283723

100281069

123105797

123060784

123443243

8077572

100831724

The preparation time of this page was 0.1 [sec].


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	1	1	2	2	3	2	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125576428 (bna-r.1 coexpression data)

Top 50 enrichment test to 125576428 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**