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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125578934   U6 snRNA phosphodiesterase 1-like 
 ath-u.5   AT5G51170   U6 snRNA phosphodiesterase-like protein 
 gma-u.5   100804441   U6 snRNA phosphodiesterase 
 vvi-u.5   100245880   uncharacterized LOC100245880 
 ppo-u.5   7457594   uncharacterized LOC7457594 
 mtr-u.5   25480021   U6 snRNA phosphodiesterase 
 mtr-u.5   25480238   U6 snRNA phosphodiesterase 
 sly-u.5   101244935   uncharacterized LOC101244935 
 osa-u.5   4330165   U6 snRNA phosphodiesterase 
 zma-u.5   100275088   uncharacterized LOC100275088 

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Top 50 coexpressed genes to 125578934 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125578934 (bna-r.1 coexpression data)

CoexMap"125578934"


bnaLOC125578934 | Entrez gene ID : 125578934    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034477 [list] [network] U6 snRNA 3'-end processing  (2 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (96 genes)  IEA  
Protein XP_048598039.1 [sequence] [blastp]
XP_048598040.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  chlo 1,  cysk 1,  nucl_plas 1  (predict for XP_048598039.1)
cyto 5,  mito 2,  nucl 1,  extr 1,  E.R. 1,  cysk 1,  cysk_nucl 1  (predict for XP_048598040.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_048598039.1)
other 8,  chlo 3  (predict for XP_048598040.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125578934
ath-u.5
for
AT5G51170
gma-u.5
for
100804441
vvi-u.5
for
100245880
ppo-u.5
for
7457594
mtr-u.5
for
25480021
mtr-u.5
for
25480238
sly-u.5
for
101244935
osa-u.5
for
4330165
zma-u.5
for
100275088


Ortholog ID: 8650
Species bna bna bra ath ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC125578934 LOC106375662 LOC103864859 AT5G51170 LOC107956782 LOC107913548 LOC102628755 LOC100804441 LOC100245880 LOC7457594 LOC25480238 LOC25480021 LOC101244935 LOC102601305 LOC107785295 LOC107770997 LOC4330165 LOC100275088 LOC123130732 LOC123141590 LOC123403769 LOC8076252 LOC100839402 CHLRE_01g041900v5
Function* U6 snRNA phosphodiesterase 1-like U6 snRNA phosphodiesterase 1 U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase-like protein DNA-directed RNA polymerases II, IV and V subunit 3 U6 snRNA phosphodiesterase uncharacterized LOC102628755 U6 snRNA phosphodiesterase uncharacterized LOC100245880 uncharacterized LOC7457594 U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase uncharacterized LOC101244935 U6 snRNA phosphodiesterase uncharacterized LOC107785295 uncharacterized LOC107770997 U6 snRNA phosphodiesterase uncharacterized LOC100275088 U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase U6 snRNA phosphodiesterase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00270 Cysteine and methionine metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna04120 Ubiquitin mediated proteolysis 3
bna00270 Cysteine and methionine metabolism 2
bna04146 Peroxisome 2
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 3
mtr00280 Valine, leucine and isoleucine degradation 2
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr00350 Tyrosine metabolism 2
mtr00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00360 Phenylalanine metabolism 2
mtr00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta04120 Ubiquitin mediated proteolysis 3
nta04141 Protein processing in endoplasmic reticulum 3
nta03010 Ribosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 5
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04820 Cytoskeleton in muscle cells 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125578934 106375662 103864859 835191 107956782 107913548 102628755 100804441 100245880 7457594 25480238 25480021 101244935 102601305 107785295 107770997 4330165 100275088 123130732 123141590 123403769 8076252 100839402 5715582
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