ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125583667	protein OSCA1
bna-r.1	106450744	CSC1-like protein At1g11960
bna-r.1	106451746	CSC1-like protein At1g32090
bra-r.6	103833510	CSC1-like protein At4g15430
bra-r.6	103868910	CSC1-like protein At1g32090
bra-r.6	103838404	CSC1-like protein At1g62320
ath-u.5	AT1G62320	ERD (early-responsive to dehydration stress) family protein
ath-u.5	AT1G32090	early-responsive to dehydration stress protein (ERD4)
ghi-r.1	107955073	CSC1-like protein At3g21620
ghi-r.1	107905909	calcium permeable stress-gated cation channel 1
ghi-r.1	107912643	CSC1-like protein At3g21620
cit-r.1	102613628	CSC1-like protein At1g32090
cit-r.1	102618085	hypothetical protein
cit-r.1	102622510	CSC1-like protein At3g21620
gma-u.5	100798474	CSC1-like protein At4g02900
gma-u.5	100777908	CSC1-like protein At3g21620
gma-u.5	100781780	calcium permeable stress-gated cation channel 1
vvi-u.5	100263040	CSC1-like protein At1g32090
vvi-u.5	100257332	calcium permeable stress-gated cation channel 1
ppo-u.5	18097335	calcium permeable stress-gated cation channel 1
ppo-u.5	18094094	CSC1-like protein At1g32090
ppo-u.5	18097334	calcium permeable stress-gated cation channel 1
mtr-u.5	11411106	CSC1-like protein At1g32090
mtr-u.5	11432872	CSC1-like protein At3g21620
sly-u.5	101249476	CSC1-like protein At1g32090
sly-u.5	101245814	calcium permeable stress-gated cation channel 1
sly-u.5	101248892	CSC1-like protein At3g21620
sot-r.1	102600603	CSC1-like protein At4g02900
sot-r.1	102604750	calcium permeable stress-gated cation channel 1-like
sot-r.1	102579637	calcium permeable stress-gated cation channel 1-like
nta-r.1	107765419	hyperosmolality-gated Ca2+ permeable channel 1.7-like
nta-r.1	107776665	hyperosmolality-gated Ca2+ permeable channel 1.7
nta-r.1	107783514	hyperosmolality-gated Ca2+ permeable channel 1.2
osa-u.5	4349511	CSC1-like protein At1g32090
osa-u.5	4326412	calcium permeable stress-gated cation channel 1
zma-u.5	100281102	uncharacterized LOC100281102
zma-u.5	103637742	CSC1-like protein
zma-u.5	103649511	calcium permeable stress-gated cation channel 1
tae-r.2	123187083	CSC1-like protein At1g11960
tae-r.2	123186632	CSC1-like protein At3g21620
hvu-r.1	123426348	CSC1-like protein At4g02900
hvu-r.1	123441134	CSC1-like protein At3g21620
sbi-r.1	8055122	CSC1-like protein At1g32090
sbi-r.1	8075448	calcium permeable stress-gated cation channel 1
bdi-r.1	100826233	CSC1-like protein At3g21620
bdi-r.1	100845799	calcium permeable stress-gated cation channel 1
cre-r.1	CHLRE_08g360400v5	uncharacterized protein
cre-r.1	CHLRE_08g360600v5	uncharacterized protein
cre-r.1	CHLRE_08g360564v5	uncharacterized protein

Top 50 coexpressed genes to 125583667 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125583667 (bna-r.1 coexpression data)

CoexMap"125583667"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005886 [list] [network] plasma membrane

(2955 genes)

IEA

GO MF

GO:0005227 [list] [network] calcium-activated cation channel activity

(43 genes)

IEA

Protein

XP_048606959.1 [sequence] [blastp]
XP_048606960.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, plas 1, vacu 1, cyto 1, mito 1, extr 1, pero 1, nucl_plas 1, golg_plas 1, E.R._vacu 1, cyto_pero 1, cysk_plas 1, E.R._plas 1	(predict for XP_048606959.1)
chlo 4, plas 1, vacu 1, cyto 1, mito 1, extr 1, pero 1, nucl_plas 1, golg_plas 1, E.R._vacu 1, cyto_pero 1, cysk_plas 1, E.R._plas 1	(predict for XP_048606960.1)

Subcellular
localization
TargetP

scret 9	(predict for XP_048606959.1)
scret 9	(predict for XP_048606960.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125583667	bna-r.1 for 106450744	bna-r.1 for 106451746	bra-r.6 for 103833510	bra-r.6 for 103868910	bra-r.6 for 103838404	ath-u.5 for AT1G62320	ath-u.5 for AT1G32090	ghi-r.1 for 107955073	ghi-r.1 for 107905909	ghi-r.1 for 107912643	cit-r.1 for 102613628	cit-r.1 for 102618085	cit-r.1 for 102622510	gma-u.5 for 100798474	gma-u.5 for 100777908	gma-u.5 for 100781780	vvi-u.5 for 100263040	vvi-u.5 for 100257332	ppo-u.5 for 18097335	ppo-u.5 for 18094094	ppo-u.5 for 18097334	mtr-u.5 for 11411106	mtr-u.5 for 11432872	sly-u.5 for 101249476	sly-u.5 for 101245814	sly-u.5 for 101248892	sot-r.1 for 102600603	sot-r.1 for 102604750	sot-r.1 for 102579637	nta-r.1 for 107765419	nta-r.1 for 107776665	nta-r.1 for 107783514	osa-u.5 for 4349511	osa-u.5 for 4326412	zma-u.5 for 100281102	zma-u.5 for 103637742	zma-u.5 for 103649511	tae-r.2 for 123187083	tae-r.2 for 123186632	hvu-r.1 for 123426348	hvu-r.1 for 123441134	sbi-r.1 for 8055122	sbi-r.1 for 8075448	bdi-r.1 for 100826233	bdi-r.1 for 100845799	cre-r.1 for CHLRE_08g360400v5	cre-r.1 for CHLRE_08g360600v5	cre-r.1 for CHLRE_08g360564v5

Ortholog

Ortholog ID: 385

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

CSC1-like protein At1g32090

CSC1-like protein At4g15430

calcium permeable stress-gated cation channel 1

CSC1-like protein At1g11960

ERD (early-responsive to dehydration stress) family protein

calcium permeable stress-gated cation channel 1

CSC1-like protein At1g32090

calcium permeable stress-gated cation channel 1

CSC1-like protein At1g32090

CSC1-like protein At3g21620

CSC1-like protein At4g02900

CSC1-like protein At1g32090

calcium permeable stress-gated cation channel 1

CSC1-like protein At1g32090

calcium permeable stress-gated cation channel 1

CSC1-like protein At1g32090

CSC1-like protein At3g21620

CSC1-like protein At1g32090

calcium permeable stress-gated cation channel 1

CSC1-like protein At4g02900

CSC1-like protein At3g21620

CSC1-like protein At1g32090

hyperosmolality-gated Ca2+ permeable channel 1.8-like

hyperosmolality-gated Ca2+ permeable channel 1.5

hyperosmolality-gated Ca2+ permeable channel 1.7-like

CSC1-like protein At1g32090

calcium permeable stress-gated cation channel 1

uncharacterized LOC100281102

calcium permeable stress-gated cation channel 1-like

CSC1-like protein At4g02900

CSC1-like protein At1g32090

CSC1-like protein At4g02900

CSC1-like protein At1g32090

CSC1-like protein At3g21620

CSC1-like protein At1g32090

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4
ghi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4
ghi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	3
gma04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00100	Steroid biosynthesis	2
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot00590	Arachidonic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	3
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	5
zma00562	Inositol phosphate metabolism	2
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00900	Terpenoid backbone biosynthesis	2
sbi04712	Circadian rhythm - plant	2
sbi00561	Glycerolipid metabolism	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	4
bdi04145	Phagosome	4
bdi00230	Purine metabolism	2
bdi03050	Proteasome	2
bdi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	3

Expression

Expression pattern

Entrez Gene ID^*

106406663

106358785

106366987

103859757

103872041

842530

837748

827214

107905909

107946795

107958289

102613628

102622510

102625734

100798474

100818689

100500239

100263040

100257332

18094094

7489888

7491890

11411106

11446419

101245814

101250627

102600603

102601348

102589464

107810099

107813181

107831861

4349511

4326412

100281102

103651635

103630383

123050782

123426348

123436852

8055122

8065339

100826233

100842875

5727851

5720683

5727852

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	3	3	3	2	3	2	3	3	3	2	3	2	2	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125583667 (bna-r.1 coexpression data)

Top 50 enrichment test to 125583667 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**