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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   rpoB   RNA polymerase beta subunit 
 bra-r.6   117126012   DNA-directed RNA polymerase subunit beta 
 bra-r.6   117131034   DNA-directed RNA polymerase subunit beta-like 
 ghi-r.1   rpoB   RNA polymerase beta chain 
 cit-r.1   rpoB   RNA polymerase beta subunit 
 gma-u.5   rpoB   RNA polymerase beta chain 
 vvi-u.5   rpoB   RNA polymerase beta chain 
 ppo-u.5   112323823   DNA-directed RNA polymerase subunit beta 
 ppo-u.5   rpoB   RNA polymerase beta subunit 
 mtr-u.5   120580065   DNA-directed RNA polymerase subunit beta 
 mtr-u.5   rpoB   RNA polymerase beta subunit 
 sly-u.5   rpoB   RNA polymerase beta subunit 
 sot-r.1   rpoB   RNA polymerase beta subunit 
 nta-r.1   rpoB   RNA polymerase beta chain 
 osa-u.5   rpoB   RNA polymerase beta subunit 
 hvu-r.1   123423014   DNA-directed RNA polymerase subunit beta 
 hvu-r.1   123421664   DNA-directed RNA polymerase subunit beta 
 sbi-r.1   rpoB   RNA polymerase beta subunit 
 bdi-r.1   rpoB   RNA polymerase beta subunit 

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Top 50 coexpressed genes to rpoB (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rpoB (bna-r.1 coexpression data)

CoexMap"125585442"


bnaLOC125585442 | Entrez gene ID : 125585442    
Species bna bra ghi cit gma vvi ppo mtr sly sot nta osa hvu sbi bdi zma cre tae ath
Paralog 1 2 1 1 1 1 2 2 1 1 1 1 2 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (19 genes)  IEA  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048610467.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  mito 1,  E.R. 1,  cysk 1,  cysk_nucl 1  (predict for XP_048610467.1)
Subcellular
localization
TargetP
other 9  (predict for XP_048610467.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
rpoB
bra-r.6
for
117126012
bra-r.6
for
117131034
ghi-r.1
for
rpoB
cit-r.1
for
rpoB
gma-u.5
for
rpoB
vvi-u.5
for
rpoB
ppo-u.5
for
112323823
ppo-u.5
for
rpoB
mtr-u.5
for
120580065
mtr-u.5
for
rpoB
sly-u.5
for
rpoB
sot-r.1
for
rpoB
nta-r.1
for
rpoB
osa-u.5
for
rpoB
hvu-r.1
for
123423014
hvu-r.1
for
123421664
sbi-r.1
for
rpoB
bdi-r.1
for
rpoB


Ortholog ID: 3284
Species bna bra bra ghi cit gma vvi ppo ppo mtr mtr sly sot nta osa hvu hvu hvu sbi bdi
Symbol rpoB LOC117126012 LOC117131034 rpoB rpoB rpoB rpoB LOC112323823 rpoB LOC120580065 rpoB rpoB rpoB rpoB rpoB LOC123421979 LOC123423266 LOC123419399 rpoB rpoB
Function* RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit beta-like RNA polymerase beta chain RNA polymerase beta subunit RNA polymerase beta chain RNA polymerase beta chain DNA-directed RNA polymerase subunit beta RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta chain RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit beta RNA polymerase beta subunit RNA polymerase beta subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
ghi00190 Oxidative phosphorylation 3
ghi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 6
cit00190 Oxidative phosphorylation 6
cit03010 Ribosome 3
cit03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 9
gma03020 RNA polymerase 4
gma00195 Photosynthesis 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00190 Oxidative phosphorylation 3
vvi03020 RNA polymerase 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03020 RNA polymerase 5
ppo00190 Oxidative phosphorylation 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00190 Oxidative phosphorylation 5
ppo03020 RNA polymerase 5
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
sly00195 Photosynthesis 3
sly03020 RNA polymerase 3
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 8
sot03010 Ribosome 4
sot00190 Oxidative phosphorylation 3
sot03020 RNA polymerase 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 6
nta00195 Photosynthesis 5
nta03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa00190 Oxidative phosphorylation 9
osa03020 RNA polymerase 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 9
sbi03010 Ribosome 5
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 5
bdi00195 Photosynthesis 5
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11542067 117126012 117131034 3989197 4271235 3989291 4025099 112323823 4929645 120580065 5333159 3950478 4099994 800449 3131432 123421979 123423266 123419399 4549132 6439892
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