ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106414253	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
bna-r.1	106385537	homeobox protein knotted-1-like 1
bra-r.6	103840767	homeobox protein knotted-1-like 6
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	103858468	homeobox protein knotted-1-like 1
ath-u.5	KNAT2	homeobox knotted-like protein
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
cit-r.1	102609444	homeobox protein knotted-1-like LET6
cit-r.1	102615394	homeotic protein knotted-1
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100803095	homeobox protein knotted-1-like
gma-u.5	100801995	homeobox protein knotted-1-like LET6
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
vvi-u.5	100255834	homeobox protein knotted-1-like 2
ppo-u.5	112327500	homeobox protein knotted-1-like 1
ppo-u.5	7460768	homeobox protein knotted-1-like 6
ppo-u.5	7463625	homeobox protein SBH1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	11415594	homeobox protein knotted-1-like 6
mtr-u.5	25486232	homeobox protein SBH1
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
sot-r.1	102577616	POTH1
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
nta-r.1	107817797	homeobox protein knotted-1-like 1
nta-r.1	107767218	homeotic protein knotted-1-like
nta-r.1	107808713	homeobox protein knotted-1-like 1
osa-u.5	4342320	homeobox protein knotted-1-like 12
zma-u.5	606458	knotted related homeobox 8
zma-u.5	100283277	homeobox protein rough sheath 1
zma-u.5	100283504	KNOX1 domain containing protein
tae-r.2	123110107	homeobox protein knotted-1-like 10
tae-r.2	123045058	homeobox protein knotted-1-like 12
tae-r.2	123113454	homeobox protein rough sheath 1
hvu-r.1	123415825	homeobox protein knotted-1-like 10
sbi-r.1	8059916	homeobox protein rough sheath 1
sbi-r.1	8054187	homeobox protein knotted-1-like 4
sbi-r.1	8084184	homeobox protein rough sheath 1
bdi-r.1	100843507	homeobox protein KNOX3
bdi-r.1	100833629	homeobox protein knotted-1-like 4
bdi-r.1	100832589	homeobox protein rough sheath 1

Top 50 coexpressed genes to 106414253 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106414253 (bna-r.1 coexpression data)

CoexMap"125587101"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5322 genes)

IEA

GO CC

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(968 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_048613205.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3

(predict for XP_048613205.1)

Subcellular
localization
TargetP

other 3

(predict for XP_048613205.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106414253	bna-r.1 for 106434220	bna-r.1 for 106385537	bra-r.6 for 103840767	bra-r.6 for 103852657	bra-r.6 for 103858468	ath-u.5 for KNAT2	ath-u.5 for STM	ath-u.5 for KNAT6	ghi-r.1 for 107935395	ghi-r.1 for 107933765	ghi-r.1 for 107930537	cit-r.1 for 102609444	cit-r.1 for 102615394	cit-r.1 for 102614106	gma-u.5 for 100803730	gma-u.5 for 100803095	gma-u.5 for 100801995	vvi-u.5 for 100267474	vvi-u.5 for 100264808	vvi-u.5 for 100255834	ppo-u.5 for 112327500	ppo-u.5 for 7460768	ppo-u.5 for 7463625	mtr-u.5 for 11406488	mtr-u.5 for 11415594	mtr-u.5 for 25486232	sly-u.5 for T6	sly-u.5 for KN4	sot-r.1 for 102577616	sot-r.1 for 102579398	nta-r.1 for 107817797	nta-r.1 for 107767218	nta-r.1 for 107808713	osa-u.5 for 4342320	zma-u.5 for 606458	zma-u.5 for 100283277	zma-u.5 for 100283504	tae-r.2 for 123110107	tae-r.2 for 123045058	tae-r.2 for 123113454	hvu-r.1 for 123415825	sbi-r.1 for 8059916	sbi-r.1 for 8054187	sbi-r.1 for 8084184	bdi-r.1 for 100843507	bdi-r.1 for 100833629	bdi-r.1 for 100832589

Ortholog

Ortholog ID: 275

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

KNAT2

STM

KNAT6

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox knotted-like protein

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like LET6

homeotic protein knotted-1

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like

homeotic protein knotted-1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 7

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

106404904

125600843

103852657

103858468

103835665

843388

842534

838946

107924993

107938311

107895047

102609444

102615394

102614106

100803095

100800822

100786454

100255834

100248152

112327500

7478899

11406488

11415594

25482021

543520

544007

544029

102581859

102601860

107817797

107781949

4342320

4337701

541960

541961

542487

123180293

123180294

123090945

8059916

8071273

8059967

100832589

100839205

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	3	3	3	3	3	3	2	2	3	1	3	3	1	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106414253 (bna-r.1 coexpression data)

Top 50 enrichment test to 106414253 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**