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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103856576   tRNA-splicing endonuclease subunit Sen2-2 
 ath-u.5   SEN1   splicing endonuclease 1 
 ath-u.5   SEN2   splicing endonuclease 2 
 ghi-r.1   107954459   tRNA-splicing endonuclease subunit Sen2-1 
 ghi-r.1   107935484   tRNA-splicing endonuclease subunit Sen2-1 
 ghi-r.1   107942887   tRNA-splicing endonuclease subunit Sen2-1 
 cit-r.1   102624537   tRNA-splicing endonuclease subunit Sen2-1-like 
 gma-u.5   100810335   tRNA-splicing endonuclease subunit Sen2-1-like 
 gma-u.5   100807021   tRNA-splicing endonuclease subunit Sen2-1 
 vvi-u.5   100255233   tRNA-splicing endonuclease subunit Sen2-1 
 ppo-u.5   7472137   tRNA-splicing endonuclease subunit Sen2-2 
 mtr-u.5   11414349   tRNA-splicing endonuclease subunit Sen2-1 
 sly-u.5   101260236   tRNA-splicing endonuclease subunit Sen2-1 
 sot-r.1   102601807   tRNA-splicing endonuclease subunit Sen2-1-like 
 sot-r.1   102603151   tRNA-splicing endonuclease subunit Sen2-1-like 
 nta-r.1   107830094   tRNA-splicing endonuclease subunit Sen2-1-like 
 osa-u.5   4341203   probable tRNA-splicing endonuclease subunit Sen2 
 osa-u.5   4350867   probable tRNA-splicing endonuclease subunit Sen2 
 zma-u.5   100282606   tRNA-splicing endonuclease subunit Sen2 
 tae-r.2   123060090   probable tRNA-splicing endonuclease subunit Sen2 
 tae-r.2   123068570   probable tRNA-splicing endonuclease subunit Sen2 
 tae-r.2   123077107   probable tRNA-splicing endonuclease subunit Sen2 
 hvu-r.1   123410624   probable tRNA-splicing endonuclease subunit Sen2 
 hvu-r.1   123439335   probable tRNA-splicing endonuclease subunit Sen2 
 sbi-r.1   110431285   probable tRNA-splicing endonuclease subunit Sen2 
 bdi-r.1   100821766   probable tRNA-splicing endonuclease subunit Sen2 
 cre-r.1   CHLRE_02g096900v5   uncharacterized protein 

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Top 50 coexpressed genes to 103856576 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103856576 (bra-r.6 coexpression data)

CoexMap"125592346"


bnaLOC125592346 | Entrez gene ID : 125592346    
Species bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 1 2 3 1 2 1 1 1 1 2 1 2 1 3 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (10 genes)  IEA  
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (26 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (10 genes)  IEA  
GO MF
GO:0000213 [list] [network] tRNA-intron lyase activity  (5 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_048623268.1 [sequence] [blastp]
XP_048623270.1 [sequence] [blastp]
XP_048623271.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_048623268.1)
nucl 7,  cyto 1,  mito 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_048623270.1)
nucl 7,  cyto 1,  mito 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_048623271.1)
Subcellular
localization
TargetP
other 3  (predict for XP_048623268.1)
other 3  (predict for XP_048623270.1)
other 3  (predict for XP_048623271.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103856576
ath-u.5
for
SEN1
ath-u.5
for
SEN2
ghi-r.1
for
107954459
ghi-r.1
for
107935484
ghi-r.1
for
107942887
cit-r.1
for
102624537
gma-u.5
for
100810335
gma-u.5
for
100807021
vvi-u.5
for
100255233
ppo-u.5
for
7472137
mtr-u.5
for
11414349
sly-u.5
for
101260236
sot-r.1
for
102601807
sot-r.1
for
102603151
nta-r.1
for
107830094
osa-u.5
for
4341203
osa-u.5
for
4350867
zma-u.5
for
100282606
tae-r.2
for
123060090
tae-r.2
for
123068570
tae-r.2
for
123077107
hvu-r.1
for
123410624
hvu-r.1
for
123439335
sbi-r.1
for
110431285
bdi-r.1
for
100821766
cre-r.1
for
CHLRE_02g096900v5


Ortholog ID: 4924
Species bra ath ath ghi ghi ghi cit gma gma vvi ppo mtr sly sot sot nta osa osa zma tae tae hvu hvu sbi bdi cre
Symbol LOC103856576 SEN1 SEN2 LOC107954459 LOC107935484 LOC107942887 LOC102624537 LOC100810335 LOC100807021 LOC100255233 LOC7472137 LOC11414349 LOC101260236 LOC102601807 LOC102603151 LOC107830094 LOC4341203 LOC4350867 LOC100282606 LOC123060090 LOC123068570 LOC123410624 LOC123439335 LOC110431285 LOC100821766 CHLRE_02g096900v5
Function* tRNA-splicing endonuclease subunit Sen2-2 splicing endonuclease 1 splicing endonuclease 2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma00270 Cysteine and methionine metabolism 2
zma00670 One carbon pool by folate 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103856576 823701 836145 107954459 107935484 107942887 102624537 100810335 100807021 100255233 7472137 11414349 101260236 102601807 102603151 107830094 4341203 4350867 100282606 123060090 123068570 123410624 123439335 110431285 100821766 5725603
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