ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125593982	regulation of nuclear pre-mRNA domain-containing protein 1A-like
bna-r.1	106349302	regulation of nuclear pre-mRNA domain-containing protein 1A-like
bna-r.1	106383086	regulation of nuclear pre-mRNA domain-containing protein 1A
bna-r.1	106376974	regulation of nuclear pre-mRNA domain-containing protein 1A
bra-r.6	103836971	regulation of nuclear pre-mRNA domain-containing protein 1B
bra-r.6	103855848	regulation of nuclear pre-mRNA domain-containing protein 1A
bra-r.6	103850345	regulation of nuclear pre-mRNA domain-containing protein 1A
ath-u.5	AT3G26990	ENTH/VHS family protein
ath-u.5	AT5G10060	ENTH/VHS family protein
ath-u.5	AT5G65180	ENTH/VHS family protein
ghi-r.1	107890033	regulation of nuclear pre-mRNA domain-containing protein 1B
ghi-r.1	121206692	regulation of nuclear pre-mRNA domain-containing protein 1B
ghi-r.1	107948935	histone acetyltransferase KAT6A
cit-r.1	102630810	uncharacterized LOC102630810
cit-r.1	102628356	uncharacterized LOC102628356
cit-r.1	102614365	uncharacterized LOC102614365
gma-u.5	100808335	regulation of nuclear pre-mRNA domain-containing protein 1A
gma-u.5	100802429	regulation of nuclear pre-mRNA domain-containing protein 1B
gma-u.5	100800067	regulation of nuclear pre-mRNA domain-containing protein 1A
vvi-u.5	100250806	uncharacterized LOC100250806
vvi-u.5	100257727	uncharacterized LOC100257727
vvi-u.5	100250127	uncharacterized LOC100250127
ppo-u.5	18100965	uncharacterized LOC18100965
ppo-u.5	7477109	uncharacterized LOC7477109
ppo-u.5	7456257	UPF0400 protein C337.03
mtr-u.5	11427699	regulation of nuclear pre-mRNA domain-containing protein 1A
mtr-u.5	11442951	regulation of nuclear pre-mRNA domain-containing protein 1A
mtr-u.5	11435944	regulation of nuclear pre-mRNA domain-containing protein 1A
sly-u.5	101261976	uncharacterized LOC101261976
sly-u.5	101245837	uncharacterized LOC101245837
sly-u.5	101266382	uncharacterized LOC101266382
sot-r.1	102584323	uncharacterized LOC102584323
sot-r.1	102585278	regulation of nuclear pre-mRNA domain-containing protein 1B-like
sot-r.1	102580771	regulation of nuclear pre-mRNA domain-containing protein 1B
nta-r.1	107787582	uncharacterized LOC107787582
nta-r.1	107825766	uncharacterized LOC107825766
nta-r.1	107816383	uncharacterized LOC107816383
osa-u.5	4327230	uncharacterized LOC4327230
osa-u.5	4337145	uncharacterized LOC4337145
osa-u.5	4349670	uncharacterized LOC4349670
zma-u.5	103651671	regulation of nuclear pre-mRNA domain-containing protein 1B-like
zma-u.5	100384037	zinc finger homeobox protein 4
zma-u.5	100382152	uncharacterized LOC100382152
tae-r.2	123063154	ENHANCER OF AG-4 protein 2
tae-r.2	123072058	arp2/3 complex-activating protein rickA
tae-r.2	123080344	ENHANCER OF AG-4 protein 2
hvu-r.1	123445280	UPF0400 protein C337.03-like
hvu-r.1	123395218	regulation of nuclear pre-mRNA domain-containing protein 1A-like
hvu-r.1	123448218	regulation of nuclear pre-mRNA domain-containing protein 2-like
sbi-r.1	8059380	formin-like protein 3
sbi-r.1	8070377	splicing factor 1
sbi-r.1	8083053	actin cytoskeleton-regulatory complex protein PAN1
bdi-r.1	100845741	proline-rich protein 36
bdi-r.1	100837117	UPF0400 protein C337.03
bdi-r.1	100837105	regulation of nuclear pre-mRNA domain-containing protein 1A
cre-r.1	CHLRE_11g481900v5	uncharacterized protein

Top 50 coexpressed genes to 125593982 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125593982 (bna-r.1 coexpression data)

CoexMap"125593982"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031124 [list] [network] mRNA 3'-end processing

(33 genes)

IEA

GO CC

GO:0016591 [list] [network] RNA polymerase II, holoenzyme

(240 genes)

IEA

GO MF

GO:0000993 [list] [network] RNA polymerase II complex binding

(46 genes)

IEA

Protein

XP_048626279.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_048626279.1)

Subcellular
localization
TargetP

other 6, scret 3

(predict for XP_048626279.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125593982	bna-r.1 for 106349302	bna-r.1 for 106383086	bna-r.1 for 106376974	bra-r.6 for 103836971	bra-r.6 for 103855848	bra-r.6 for 103850345	ath-u.5 for AT3G26990	ath-u.5 for AT5G10060	ath-u.5 for AT5G65180	ghi-r.1 for 107890033	ghi-r.1 for 121206692	ghi-r.1 for 107948935	cit-r.1 for 102630810	cit-r.1 for 102628356	cit-r.1 for 102614365	gma-u.5 for 100808335	gma-u.5 for 100802429	gma-u.5 for 100800067	vvi-u.5 for 100250806	vvi-u.5 for 100257727	vvi-u.5 for 100250127	ppo-u.5 for 18100965	ppo-u.5 for 7477109	ppo-u.5 for 7456257	mtr-u.5 for 11427699	mtr-u.5 for 11442951	mtr-u.5 for 11435944	sly-u.5 for 101261976	sly-u.5 for 101245837	sly-u.5 for 101266382	sot-r.1 for 102584323	sot-r.1 for 102585278	sot-r.1 for 102580771	nta-r.1 for 107787582	nta-r.1 for 107825766	nta-r.1 for 107816383	osa-u.5 for 4327230	osa-u.5 for 4337145	osa-u.5 for 4349670	zma-u.5 for 103651671	zma-u.5 for 100384037	zma-u.5 for 100382152	tae-r.2 for 123063154	tae-r.2 for 123072058	tae-r.2 for 123080344	hvu-r.1 for 123445280	hvu-r.1 for 123395218	hvu-r.1 for 123448218	sbi-r.1 for 8059380	sbi-r.1 for 8070377	sbi-r.1 for 8083053	bdi-r.1 for 100845741	bdi-r.1 for 100837117	bdi-r.1 for 100837105	cre-r.1 for CHLRE_11g481900v5

Ortholog

Ortholog ID: 1017

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

regulation of nuclear pre-mRNA domain-containing protein 1A-like

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1A-like

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

ENTH/VHS family protein

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 2

uncharacterized LOC102630810

uncharacterized LOC102628356

uncharacterized LOC102614365

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

uncharacterized LOC100815709

uncharacterized LOC100250806

uncharacterized LOC100250127

uncharacterized LOC100249768

uncharacterized LOC7477109

UPF0400 protein C337.03

uncharacterized LOC7477107

regulation of nuclear pre-mRNA domain-containing protein 1A

uncharacterized LOC101261976

uncharacterized LOC101245837

uncharacterized LOC101266382

uncharacterized LOC102584323

regulation of nuclear pre-mRNA domain-containing protein 1B-like

regulation of nuclear pre-mRNA domain-containing protein 1B

uncharacterized LOC107787582

uncharacterized LOC107825766

uncharacterized LOC107765362

uncharacterized LOC4327230

uncharacterized LOC4349670

UPF0400 protein C337.03

zinc finger homeobox protein 4

uncharacterized LOC100278822

uncharacterized LOC100275719

arp2/3 complex-activating protein rickA

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 2

UPF0400 protein C337.03-like

regulation of nuclear pre-mRNA domain-containing protein 1A-like

protein enabled homolog

splicing factor 1

actin cytoskeleton-regulatory complex protein PAN1

regulation of nuclear pre-mRNA domain-containing protein 1A

proline-rich protein 36

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6
bra03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03018	RNA degradation	3
bra04120	Ubiquitin mediated proteolysis	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00310	Lysine degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa03250	Viral life cycle - HIV-1	3
osa03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7
cre03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

125593982

106376974

106384910

103836971

103850345

103875259

822316

830870

836642

107890033

107948370

107897970

102630810

102628356

102614365

100802429

100800067

100815709

100250806

100250127

100249768

7477109

7456257

7477107

11427699

11442951

11435944

101261976

101245837

101266382

102584323

102585278

102580771

107787582

107825766

107765362

4327230

4349670

4351389

100384037

100278822

100275719

123072058

123119886

123120431

123445280

123395218

123452771

8070377

8083053

8068447

100845741

100837105

100829173

66055366

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125593982 (bna-r.1 coexpression data)

Top 50 enrichment test to 125593982 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**