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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106375011   DNA-directed RNA polymerases II, IV and V subunit 12 
 bna-r.1   106367663   DNA-directed RNA polymerases II, IV and V subunit 12 
 bra-r.6   103871114   DNA-directed RNA polymerases II, IV and V subunit 12 
 bra-r.6   103832655   DNA-directed RNA polymerases II, IV and V subunit 12 
 ath-u.5   NRPB12   DNA directed RNA polymerase, 7 kDa subunit 
 ghi-r.1   121218671   DNA-directed RNA polymerases II, IV and V subunit 12 
 ghi-r.1   107960277   DNA-directed RNA polymerases II, IV and V subunit 12 
 ghi-r.1   107923162   DNA-directed RNA polymerases II, IV and V subunit 12 
 cit-r.1   102608086   DNA-directed RNA polymerases II, IV and V subunit 12 
 gma-u.5   100790164   DNA-directed RNA polymerases II, IV and V subunit 12 
 gma-u.5   100500417   DNA-directed RNA polymerases II, IV and V subunit 12 
 ppo-u.5   7454993   DNA-directed RNA polymerases II, IV and V subunit 12 
 mtr-u.5   25498670   DNA-directed RNA polymerases II, IV and V subunit 12 
 osa-u.5   9272152   DNA-directed RNA polymerases II, IV and V subunit 12 
 osa-u.5   9269422   DNA-directed RNA polymerases II, IV and V subunit 12 
 zma-u.5   100284471   DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide 
 zma-u.5   100285004   uncharacterized LOC100285004 
 tae-r.2   123045490   DNA-directed RNA polymerases II, IV and V subunit 12 
 tae-r.2   123053337   DNA-directed RNA polymerases II, IV and V subunit 12 
 tae-r.2   123053691   DNA-directed RNA polymerases II, IV and V subunit 12 
 hvu-r.1   123426753   DNA-directed RNA polymerases II, IV and V subunit 12 
 hvu-r.1   123440254   DNA-directed RNA polymerases II, IV and V subunit 12 
 sbi-r.1   8057959   DNA-directed RNA polymerases II, IV and V subunit 12 
 sbi-r.1   8085014   DNA-directed RNA polymerases II, IV and V subunit 12 
 bdi-r.1   100844690   DNA-directed RNA polymerases II, IV and V subunit 12 
 bdi-r.1   100843746   DNA-directed RNA polymerases II, IV and V subunit 12 
 bdi-r.1   100828953   DNA-directed RNA polymerases II, IV and V subunit 12 
 cre-r.1   CHLRE_07g342352v5   uncharacterized protein 

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Top 50 coexpressed genes to 106375011 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106375011 (bna-r.1 coexpression data)

CoexMap"125603040"


bnaLOC125603040 | Entrez gene ID : 125603040    
Species bna bra ath ghi cit gma ppo mtr osa zma tae hvu sbi bdi cre vvi sot sly nta
Paralog 2 2 1 3 1 2 1 1 2 2 3 2 2 3 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (52 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (74 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048630266.1 [sequence] [blastp]
XP_048630267.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 3,  chlo_mito 3  (predict for XP_048630266.1)
chlo 6,  extr 3,  chlo_mito 3  (predict for XP_048630267.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048630266.1)
other 8  (predict for XP_048630267.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106375011
bna-r.1
for
106367663
bra-r.6
for
103871114
bra-r.6
for
103832655
ath-u.5
for
NRPB12
ghi-r.1
for
121218671
ghi-r.1
for
107960277
ghi-r.1
for
107923162
cit-r.1
for
102608086
gma-u.5
for
100790164
gma-u.5
for
100500417
ppo-u.5
for
7454993
mtr-u.5
for
25498670
osa-u.5
for
9272152
osa-u.5
for
9269422
zma-u.5
for
100284471
zma-u.5
for
100285004
tae-r.2
for
123045490
tae-r.2
for
123053337
tae-r.2
for
123053691
hvu-r.1
for
123426753
hvu-r.1
for
123440254
sbi-r.1
for
8057959
sbi-r.1
for
8085014
bdi-r.1
for
100844690
bdi-r.1
for
100843746
bdi-r.1
for
100828953
cre-r.1
for
CHLRE_07g342352v5


Ortholog ID: 5383
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma ppo mtr osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC106375011 LOC106359440 LOC106350995 LOC103871114 LOC103832655 NRPB12 LOC121218671 LOC107960277 LOC107904697 LOC102608086 LOC100790164 LOC100500417 LOC7454993 LOC25498670 LOC9272152 LOC9269422 LOC100284471 LOC100285004 LOC123045490 LOC123053337 LOC123053691 LOC123426753 LOC123440254 LOC8057959 LOC8085014 LOC100844690 LOC100843746 LOC100828953 CHLRE_07g342352v5
Function* DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA directed RNA polymerase, 7 kDa subunit DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide uncharacterized LOC100285004 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 DNA-directed RNA polymerases II, IV and V subunit 12 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00510 N-Glycan biosynthesis 2
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00510 N-Glycan biosynthesis 2
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00510 N-Glycan biosynthesis 2
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
cit00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03010 Ribosome 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03010 Ribosome 2
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03015 mRNA surveillance pathway 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03420 Nucleotide excision repair 6
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 8
tae03420 Nucleotide excision repair 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 3
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03050 Proteasome 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03010 Ribosome 4
sbi03420 Nucleotide excision repair 4
sbi03020 RNA polymerase 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 7
cre03008 Ribosome biogenesis in eukaryotes 4
cre03420 Nucleotide excision repair 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106375011 106359440 106350995 103871114 103832655 834103 121218671 107960277 107904697 102608086 100790164 100500417 7454993 25498670 9272152 9269422 100284471 100285004 123045490 123053337 123053691 123426753 123440254 8057959 8085014 100844690 100843746 100828953 5717990
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