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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18096410   pentatricopeptide repeat-containing protein At4g01570 
 gma-u.5   100788992   pentatricopeptide repeat-containing protein At4g01570 
 mtr-u.5   11420612   pentatricopeptide repeat-containing protein At4g01570 
 ath-u.5   AT4G01570   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103836811   pentatricopeptide repeat-containing protein At4g01570 
 vvi-u.5   100266135   pentatricopeptide repeat-containing protein At4g01570 
 ghi-r.1   107954407   pentatricopeptide repeat-containing protein At4g01570 
 ghi-r.1   107953014   pentatricopeptide repeat-containing protein At4g01570 
 bna-r.1   106426673   pentatricopeptide repeat-containing protein At4g01570 
 bna-r.1   106430084   pentatricopeptide repeat-containing protein At4g01570-like 
 cit-r.1   102609259   pentatricopeptide repeat-containing protein At4g01570 
 sly-u.5   101257922   pentatricopeptide repeat-containing protein At4g01570 
 sot-r.1   102601172   pentatricopeptide repeat-containing protein At4g01570 
 nta-r.1   107823019   pentatricopeptide repeat-containing protein At4g01570 
 nta-r.1   107816552   pentatricopeptide repeat-containing protein At4g01570-like 
 osa-u.5   9268979   pentatricopeptide repeat-containing protein At4g01570 
 zma-u.5   103643900   pentatricopeptide repeat-containing protein 
 tae-r.2   123095881   pentatricopeptide repeat-containing protein At4g01570 
 tae-r.2   123090863   pentatricopeptide repeat-containing protein At4g01570-like 
 tae-r.2   123087099   pentatricopeptide repeat-containing protein At4g01570 
 hvu-r.1   123450196   pentatricopeptide repeat-containing protein At4g01570 
 sbi-r.1   8063382   pentatricopeptide repeat-containing protein At4g01570 
 bdi-r.1   104582611   pentatricopeptide repeat-containing protein At4g01570 

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Top 50 coexpressed genes to 18096410 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18096410 (ppo-u.5 coexpression data)

CoexMap"127903924"


ppoLOC127903924 | Entrez gene ID : 127903924    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002302689.3 [sequence] [blastp]
XP_024450227.1 [sequence] [blastp]
XP_052306703.1 [sequence] [blastp]
XP_052306704.1 [sequence] [blastp]
XP_052306705.1 [sequence] [blastp]
XP_052306706.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_002302689.3)
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_024450227.1)
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_052306703.1)
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_052306704.1)
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_052306705.1)
chlo 4,  mito 2,  E.R. 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_052306706.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_002302689.3)
mito 6,  chlo 3  (predict for XP_024450227.1)
mito 6,  chlo 3  (predict for XP_052306703.1)
mito 6,  chlo 3  (predict for XP_052306704.1)
mito 6,  chlo 3  (predict for XP_052306705.1)
mito 6,  chlo 3  (predict for XP_052306706.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18096410
gma-u.5
for
100788992
mtr-u.5
for
11420612
ath-u.5
for
AT4G01570
bra-r.6
for
103836811
vvi-u.5
for
100266135
ghi-r.1
for
107954407
ghi-r.1
for
107953014
bna-r.1
for
106426673
bna-r.1
for
106430084
cit-r.1
for
102609259
sly-u.5
for
101257922
sot-r.1
for
102601172
nta-r.1
for
107823019
nta-r.1
for
107816552
osa-u.5
for
9268979
zma-u.5
for
103643900
tae-r.2
for
123095881
tae-r.2
for
123090863
tae-r.2
for
123087099
hvu-r.1
for
123450196
sbi-r.1
for
8063382
bdi-r.1
for
104582611


Ortholog ID: 10875
Species ppo gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC18096410 LOC100788992 LOC11420612 AT4G01570 LOC103836811 LOC100266135 LOC107954407 LOC107953014 LOC106426673 LOC106430084 LOC102609259 LOC101257922 LOC102601172 LOC107823019 LOC107816552 LOC9268979 LOC103643900 LOC123095881 LOC123090863 LOC123087099 LOC123450196 LOC8063382 LOC104582611
Function* pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570-like pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570-like pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570-like pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570 pentatricopeptide repeat-containing protein At4g01570
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00564 Glycerophospholipid metabolism 3
osa00440 Phosphonate and phosphinate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18096410 100788992 11420612 828133 103836811 100266135 107954407 107953014 106426673 106430084 102609259 101257922 102601172 107823019 107816552 9268979 103643900 123095881 123090863 123087099 123450196 8063382 104582611
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