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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468934   non-structural maintenance of chromosomes element 4 homolog A 
 ppo-u.5   7461392   non-structural maintenance of chromosomes element 4 homolog A 
 gma-u.5   100792117   non-structural maintenance of chromosomes element 4 homolog A 
 gma-u.5   100817716   non-structural maintenance of chromosome element 4-like 
 mtr-u.5   11443787   non-structural maintenance of chromosomes element 4 homolog A 
 ath-u.5   AT3G20760   Nse4, component of Smc5/6 DNA repair complex 
 ath-u.5   AT1G51130   Nse4, component of Smc5/6 DNA repair complex 
 bra-r.6   103868585   non-structural maintenance of chromosomes element 4 homolog A 
 bra-r.6   103871301   non-structural maintenance of chromosomes element 4 homolog A 
 vvi-u.5   100255522   non-structural maintenance of chromosomes element 4 homolog A 
 ghi-r.1   107950854   non-structural maintenance of chromosomes element 4 homolog B 
 ghi-r.1   107942191   non-structural maintenance of chromosomes element 4 homolog A 
 ghi-r.1   107906751   non-structural maintenance of chromosomes element 4 homolog A 
 bna-r.1   106346072   non-structural maintenance of chromosomes element 4 homolog A 
 bna-r.1   125588716   non-structural maintenance of chromosomes element 4 homolog A-like 
 bna-r.1   106429032   non-structural maintenance of chromosomes element 4 homolog A-like 
 cit-r.1   102609635   non-structural maintenance of chromosomes element 4 homolog A 
 cit-r.1   102620982   non-structural maintenance of chromosomes element 4 homolog A-like 
 sly-u.5   101251938   non-structural maintenance of chromosomes element 4 homolog A 
 sly-u.5   101263499   non-structural maintenance of chromosomes element 4 homolog A-like 
 sot-r.1   102606189   non-structural maintenance of chromosomes element 4 homolog A-like 
 sot-r.1   102578384   non-structural maintenance of chromosomes element 4 homolog A-like 
 nta-r.1   107769329   non-structural maintenance of chromosomes element 4 homolog A 
 nta-r.1   107777999   non-structural maintenance of chromosomes element 4 homolog A-like 
 osa-u.5   4328600   non-structural maintenance of chromosomes element 4 homolog A 
 zma-u.5   103632802   non-structural maintenance of chromosomes element 4 homolog A 
 zma-u.5   100381918   Non-structural maintenance of chromosomes element 4 homolog A 
 zma-u.5   100276605   Non-structural maintenance of chromosomes element 4 homolog A 
 tae-r.2   123144232   non-structural maintenance of chromosomes element 4 homolog A 
 tae-r.2   123168924   non-structural maintenance of chromosomes element 4 homolog A 
 tae-r.2   123156376   non-structural maintenance of chromosomes element 4 homolog A 
 hvu-r.1   123403142   non-structural maintenance of chromosomes element 4 homolog A-like 
 hvu-r.1   123412774   non-structural maintenance of chromosomes element 4 homolog A-like 
 sbi-r.1   8071626   non-structural maintenance of chromosomes element 4 homolog A 
 bdi-r.1   100827892   non-structural maintenance of chromosomes element 4 homolog A 
 bdi-r.1   100822599   non-structural maintenance of chromosomes element 4 homolog B 
 cre-r.1   CHLRE_04g215650v5   uncharacterized protein 

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Top 50 coexpressed genes to 7468934 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468934 (ppo-u.5 coexpression data)

CoexMap"127904852"


ppoLOC127904852 | Entrez gene ID : 127904852    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 1 2 2 1 3 3 2 2 2 2 1 3 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO:0030915 [list] [network] Smc5-Smc6 complex  (9 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
Protein XP_052305803.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_052305803.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_052305803.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468934
ppo-u.5
for
7461392
gma-u.5
for
100792117
gma-u.5
for
100817716
mtr-u.5
for
11443787
ath-u.5
for
AT3G20760
ath-u.5
for
AT1G51130
bra-r.6
for
103868585
bra-r.6
for
103871301
vvi-u.5
for
100255522
ghi-r.1
for
107950854
ghi-r.1
for
107942191
ghi-r.1
for
107906751
bna-r.1
for
106346072
bna-r.1
for
125588716
bna-r.1
for
106429032
cit-r.1
for
102609635
cit-r.1
for
102620982
sly-u.5
for
101251938
sly-u.5
for
101263499
sot-r.1
for
102606189
sot-r.1
for
102578384
nta-r.1
for
107769329
nta-r.1
for
107777999
osa-u.5
for
4328600
zma-u.5
for
103632802
zma-u.5
for
100381918
zma-u.5
for
100276605
tae-r.2
for
123144232
tae-r.2
for
123168924
tae-r.2
for
123156376
hvu-r.1
for
123403142
hvu-r.1
for
123412774
sbi-r.1
for
8071626
bdi-r.1
for
100827892
bdi-r.1
for
100822599
cre-r.1
for
CHLRE_04g215650v5


Ortholog ID: 2411
Species ppo ppo gma gma mtr ath ath bra bra vvi ghi ghi ghi bna bna bna cit cit sly sly sot sot nta osa zma zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC7468934 LOC7461392 LOC100792117 LOC100817716 LOC11443787 AT3G20760 AT1G51130 LOC103868585 LOC103871301 LOC100255522 LOC107950854 LOC107959331 LOC107928863 LOC106346072 LOC111207240 LOC125609530 LOC102609635 LOC102620982 LOC101251938 LOC101263499 LOC102606189 LOC102578384 LOC107781380 LOC4328600 LOC103632802 LOC100276605 LOC100193130 LOC123144232 LOC123168924 LOC123156376 LOC123403142 LOC123412774 LOC8071626 LOC100827892 LOC100822599 CHLRE_04g215650v5
Function* non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosome element 4-like non-structural maintenance of chromosomes element 4 homolog A Nse4, component of Smc5/6 DNA repair complex Nse4, component of Smc5/6 DNA repair complex non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog B non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A Non-structural maintenance of chromosomes element 4 homolog A Non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A-like non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog A non-structural maintenance of chromosomes element 4 homolog B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
ppo03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03440 Homologous recombination 3
gma03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 5
nta03030 DNA replication 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7468934 7461392 100792117 100817716 11443787 821624 841536 103868585 103871301 100255522 107950854 107959331 107928863 106346072 111207240 125609530 102609635 102620982 101251938 101263499 102606189 102578384 107781380 4328600 103632802 100276605 100193130 123144232 123168924 123156376 123403142 123412774 8071626 100827892 100822599 5724275
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