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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7474978   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 gma-u.5   100788186   geranylgeranyl pyrophosphate synthase-related protein, chloroplastic-like 
 mtr-u.5   120577316   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ath-u.5   GGR   geranylgeranyl reductase 
 vvi-u.5   100855133   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 sly-u.5   GGPS   geranylgeranyl diphosphate synthase 
 osa-u.5   4330260   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 zma-u.5   103653897   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 zma-u.5   100502542   putative geranylgeranyl pyrophosphate synthase 4 

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Top 50 coexpressed genes to 7474978 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7474978 (ppo-u.5 coexpression data)

CoexMap"127905189"


ppoLOC127905189 | Entrez gene ID : 127905189    
Species ppo gma mtr ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (136 genes)  IEA  
GO CC
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (38 genes)  IEA  
Protein XP_052308001.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1,  plas 1,  extr 1,  cyto_plas 1  (predict for XP_052308001.1)
Subcellular
localization
TargetP
scret 3  (predict for XP_052308001.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7474978
gma-u.5
for
100788186
mtr-u.5
for
120577316
ath-u.5
for
GGR
vvi-u.5
for
100855133
sly-u.5
for
GGPS
osa-u.5
for
4330260
zma-u.5
for
103653897
zma-u.5
for
100502542


Ortholog ID: 10265
Species ppo gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC7474978 LOC100788186 LOC120577316 GGR LOC103850518 LOC100855133 LOC107920402 LOC107922395 LOC106438661 LOC106360195 LOC102610722 GGPS LOC102598437 LOC107770520 LOC107775163 LOC4330260 LOC103653897 LOC100502542 LOC123145055 LOC123137670 LOC123401493 LOC8076053 LOC100834501
Function* heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranylgeranyl pyrophosphate synthase-related protein, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranylgeranyl reductase heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranylgeranyl diphosphate synthase heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic putative geranylgeranyl pyrophosphate synthase 4 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
gma00270 Cysteine and methionine metabolism 3
gma00920 Sulfur metabolism 3
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi04145 Phagosome 4
bdi04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7474978 100788186 120577316 830002 103850518 100855133 107920402 107922395 106438661 106360195 102610722 101246371 102598437 107770520 107775163 4330260 103653897 100502542 123145055 123137670 123401493 8076053 100834501
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