ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	112327500	homeobox protein knotted-1-like 1
ppo-u.5	7460768	homeobox protein knotted-1-like 6
ppo-u.5	7463625	homeobox protein SBH1
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100803095	homeobox protein knotted-1-like
gma-u.5	100801995	homeobox protein knotted-1-like LET6
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	25482021	homeotic protein knotted-1
ath-u.5	KNAT2	homeobox knotted-like protein
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	103840767	homeobox protein knotted-1-like 6
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
vvi-u.5	100255834	homeobox protein knotted-1-like 2
ghi-r.1	107927170	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
ghi-r.1	107933765	homeobox protein knotted-1-like 1
bna-r.1	106404904	homeobox protein knotted-1-like 2
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106414253	homeobox protein knotted-1-like 6
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102622339	homeobox protein knotted-1-like 1
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102577616	POTH1
nta-r.1	107780680	homeobox protein knotted-1-like 6
nta-r.1	107826559	homeobox protein knotted-1-like LET6
osa-u.5	4342320	homeobox protein knotted-1-like 12
zma-u.5	606458	knotted related homeobox 8
zma-u.5	100283277	homeobox protein rough sheath 1
zma-u.5	100283504	KNOX1 domain containing protein
tae-r.2	123045058	homeobox protein knotted-1-like 12
tae-r.2	123110107	homeobox protein knotted-1-like 10
sbi-r.1	8059916	homeobox protein rough sheath 1
sbi-r.1	8054187	homeobox protein knotted-1-like 4
sbi-r.1	8084184	homeobox protein rough sheath 1
bdi-r.1	100839205	homeobox protein knotted-1-like 10
bdi-r.1	100833629	homeobox protein knotted-1-like 4
bdi-r.1	100843507	homeobox protein KNOX3

Top 50 coexpressed genes to 112327500 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 112327500 (ppo-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

homeobox protein SBH1-like

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1948 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(338 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2205 genes)	IEA

Protein

XP_052312880.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_052312880.1)

Subcellular
localization
TargetP

other 6, chlo 5

(predict for XP_052312880.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 112327500	ppo-u.5 for 7460768	ppo-u.5 for 7463625	gma-u.5 for 100803730	gma-u.5 for 100803095	gma-u.5 for 100801995	mtr-u.5 for 11406488	mtr-u.5 for 25482021	ath-u.5 for KNAT2	ath-u.5 for STM	ath-u.5 for KNAT6	bra-r.6 for 103852657	bra-r.6 for 103840767	bra-r.6 for STM	vvi-u.5 for 100267474	vvi-u.5 for 100264808	vvi-u.5 for 100255834	ghi-r.1 for 107927170	ghi-r.1 for 107930537	ghi-r.1 for 107933765	bna-r.1 for 106404904	bna-r.1 for 106420956	bna-r.1 for 106414253	cit-r.1 for 102614106	cit-r.1 for 102622339	sly-u.5 for T6	sly-u.5 for KN4	sot-r.1 for 102579398	sot-r.1 for 102577616	nta-r.1 for 107780680	nta-r.1 for 107826559	osa-u.5 for 4342320	zma-u.5 for 606458	zma-u.5 for 100283277	zma-u.5 for 100283504	tae-r.2 for 123045058	tae-r.2 for 123110107	sbi-r.1 for 8059916	sbi-r.1 for 8054187	sbi-r.1 for 8084184	bdi-r.1 for 100839205	bdi-r.1 for 100833629	bdi-r.1 for 100843507

Please wait a moment.

Ortholog

Ortholog ID: 275

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

KNAT2

STM

KNAT6

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like

homeotic protein knotted-1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like 6

homeobox knotted-like protein

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like LET6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 7

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

112327500

7478899

100803095

100800822

100786454

11406488

25482021

11415594

843388

842534

838946

103852657

103858468

103835665

100255834

100248152

107924993

107938311

107895047

106404904

125600843

102614106

102609444

102615394

543520

544007

544029

102581859

102601860

107817797

107781949

4342320

4337701

541960

541961

542487

123180293

123180294

123090945

8059916

8071273

8059967

100839205

100832589

The preparation time of this page was 0.6 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	sbi	bdi	cre	hvu
Paralog	3	3	2	3	3	3	3	3	2	2	2	2	1	3	2	3	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112327500 (ppo-u.5 coexpression data)

Top 50 enrichment test to 112327500 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**