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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   psbA   PSII 32 kDa protein 
 vvi-u.5   psbA   photosystem II protein D1 
 ath-u.5   psbA   photosystem II protein D1 
 gma-u.5   psbA   photosystem II protein D1 
 bra-r.6   117129783   photosystem II protein D1 
 bra-r.6   117126229   photosystem II protein D1 
 ppo-u.5   psbA   photosystem II protein D1 
 mtr-u.5   120580929   photosystem II protein D1 
 mtr-u.5   psbA   photosystem II protein D1 
 mtr-u.5   120580075   photosystem II protein D1 
 ghi-r.1   121227929   photosystem II protein D1 
 ghi-r.1   psbA   photosystem II protein D1 
 ghi-r.1   121226481   photosystem II protein D1 
 bna-r.1   125602599   photosystem II protein D1 
 bna-r.1   125602600   photosystem II protein D1 
 bna-r.1   125602611   photosystem II protein D1 
 cit-r.1   psbA   photosystem II protein D1 
 sly-u.5   psbA   photosystem II protein D1 
 sot-r.1   psbA   photosystem II protein D1 
 nta-r.1   psbA   photosystem II protein D1 
 osa-u.5   psbA   photosystem II protein D1 
 zma-u.5   118475436   photosystem II protein D1 
 tae-r.2   123056109   photosystem II protein D1 
 tae-r.2   123086034   photosystem II protein D1-like 
 tae-r.2   123123282   photosystem II protein D1 
 hvu-r.1   123418294   photosystem II protein D1 
 hvu-r.1   123419406   photosystem II protein D1 
 hvu-r.1   123420004   photosystem II protein D1 
 sbi-r.1   psbA   photosystem II protein D1 
 bdi-r.1   psbA   photosystem II protein D1 

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Top 50 coexpressed genes to psbA (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to psbA (vvi-u.5 coexpression data)

CoexMap"132254852"


vviLOC132254852 | Entrez gene ID : 132254852    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 3 3 3 1 1 1 1 1 1 3 3 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00195 [list] [network] Photosynthesis (102 genes)
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (9 genes)  IEA  
GO:0019684 [list] [network] photosynthesis, light reaction  (51 genes)  IEA  
GO CC
GO:0009523 [list] [network] photosystem II  (33 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (82 genes)  IEA  
GO MF
Protein XP_059597468.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  E.R. 2,  golg 2,  nucl_plas 2,  cysk_plas 2,  mito_plas 2,  cyto_plas 2  (predict for XP_059597468.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for XP_059597468.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
psbA
vvi-u.5
for
psbA
ath-u.5
for
psbA
gma-u.5
for
psbA
bra-r.6
for
117129783
bra-r.6
for
117126229
ppo-u.5
for
psbA
mtr-u.5
for
120580929
mtr-u.5
for
psbA
mtr-u.5
for
120580075
ghi-r.1
for
121227929
ghi-r.1
for
psbA
ghi-r.1
for
121226481
bna-r.1
for
125602599
bna-r.1
for
125602600
bna-r.1
for
125602611
cit-r.1
for
psbA
sly-u.5
for
psbA
sot-r.1
for
psbA
nta-r.1
for
psbA
osa-u.5
for
psbA
zma-u.5
for
118475436
tae-r.2
for
123056109
tae-r.2
for
123086034
tae-r.2
for
123123282
hvu-r.1
for
123418294
hvu-r.1
for
123419406
hvu-r.1
for
123420004
sbi-r.1
for
psbA
bdi-r.1
for
psbA


Ortholog ID: 964
Species vvi vvi ath gma bra bra ppo mtr mtr mtr ghi ghi ghi bna bna bna cit sly sot nta osa zma zma zma tae tae tae hvu hvu hvu sbi bdi
Symbol psbA psbA psbA psbA LOC117129783 LOC117126229 psbA LOC120580929 psbA LOC120577103 LOC121227929 psbA LOC121226481 LOC125602599 LOC125602600 LOC125604865 psbA psbA psbA psbA psbA LOC118475933 LOC118473630 psbA LOC123123282 LOC123176984 LOC123181322 LOC123419406 LOC123422976 LOC123418890 psbA psbA
Function* PSII 32 kDa protein photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1 photosystem II protein D1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi03010 Ribosome 5
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi03010 Ribosome 5
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 13
ppo00190 Oxidative phosphorylation 5
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 3
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 3
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
ghi03010 Ribosome 3
ghi00970 Aminoacyl-tRNA biosynthesis 3
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 12
cit00190 Oxidative phosphorylation 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 7
sot03010 Ribosome 5
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 16
nta00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 12
osa00190 Oxidative phosphorylation 6
osa03010 Ribosome 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma00195 Photosynthesis 5
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 7
sbi03010 Ribosome 7
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 8
bdi00190 Oxidative phosphorylation 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7498542 4025118 844802 3989259 117129783 117126229 4929629 120580929 5333175 120577103 121227929 3989229 121226481 125602599 125602600 125604865 4271240 3950408 4099946 800514 3131409 118475933 118473630 845199 123123282 123176984 123181322 123419406 123422976 123418890 4549136 6439798
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