ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100262981	metalloendoproteinase 2-MMP
ath-u.5	AT1G24140	Matrixin family protein
gma-u.5	SMEP1	metalloproteinase
gma-u.5	100781237	metalloendoproteinase 4-MMP
gma-u.5	100776699	metalloendoproteinase 1
bra-r.6	103860876	metalloendoproteinase 1-MMP
bra-r.6	103830895	metalloendoproteinase 2-MMP
ppo-u.5	7473919	metalloendoproteinase 1
mtr-u.5	11410103	metalloendoproteinase 1
mtr-u.5	11411133	metalloendoproteinase 1
mtr-u.5	11416976	metalloendoproteinase 5-MMP
ghi-r.1	107903694	metalloendoproteinase 2-MMP
ghi-r.1	107910864	metalloendoproteinase 1
ghi-r.1	107911610	metalloendoproteinase 4-MMP
bna-r.1	106449841	metalloendoproteinase 2-MMP-like
cit-r.1	102609561	metalloendoproteinase 3-MMP-like
cit-r.1	102616119	metalloendoproteinase 3-MMP
sly-u.5	MMP2	matrix metalloproteinase 2
sly-u.5	101251805	metalloendoproteinase 4-MMP
sot-r.1	102591586	metalloendoproteinase 4-MMP
nta-r.1	107760134	metalloendoproteinase 1-MMP-like
nta-r.1	107776901	metalloendoproteinase 1-MMP-like
nta-r.1	107768721	metalloendoproteinase 2-MMP-like
osa-u.5	4330680	metalloendoproteinase 2-MMP
osa-u.5	4349359	metalloendoproteinase 1-MMP
osa-u.5	9270797	metalloendoproteinase 2-MMP
zma-u.5	103637649	metalloendoproteinase 1-MMP
zma-u.5	100285384	metalloendoproteinase 1
zma-u.5	100274259	Metalloendoproteinase 5-MMP
tae-r.2	123141822	metalloendoproteinase 3-MMP
hvu-r.1	123439670	metalloendoproteinase 1-MMP-like
hvu-r.1	123449985	metalloendoproteinase 1-MMP-like
hvu-r.1	123402518	metalloendoproteinase 3-MMP-like
sbi-r.1	8058083	metalloendoproteinase 1-MMP
sbi-r.1	8061483	metalloendoproteinase 2-MMP
sbi-r.1	8068601	metalloendoproteinase 2-MMP
bdi-r.1	100828046	metalloendoproteinase 3-MMP
bdi-r.1	100840393	metalloendoproteinase 4-MMP
bdi-r.1	100844905	metalloendoproteinase 1-MMP
cre-r.1	CHLRE_14g609202v5	uncharacterized protein

Top 50 coexpressed genes to 100262981 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100262981 (vvi-u.5 coexpression data)

CoexMap"132255114"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030574 [list] [network] collagen catabolic process	(14 genes)	IEA
GO:0030198 [list] [network] extracellular matrix organization	(25 genes)	IEA
GO:0006508 [list] [network] proteolysis	(749 genes)	IEA

GO CC

GO:0031012 [list] [network] extracellular matrix

(13 genes)

IEA

GO MF

GO:0004222 [list] [network] metalloendopeptidase activity	(57 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(811 genes)	IEA

Protein

XP_059598836.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 4, chlo 2, mito 1, vacu 1

(predict for XP_059598836.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_059598836.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100262981	ath-u.5 for AT1G24140	gma-u.5 for SMEP1	gma-u.5 for 100781237	gma-u.5 for 100776699	bra-r.6 for 103860876	bra-r.6 for 103830895	ppo-u.5 for 7473919	mtr-u.5 for 11410103	mtr-u.5 for 11411133	mtr-u.5 for 11416976	ghi-r.1 for 107903694	ghi-r.1 for 107910864	ghi-r.1 for 107911610	bna-r.1 for 106449841	cit-r.1 for 102609561	cit-r.1 for 102616119	sly-u.5 for MMP2	sly-u.5 for 101251805	sot-r.1 for 102591586	nta-r.1 for 107760134	nta-r.1 for 107776901	nta-r.1 for 107768721	osa-u.5 for 4330680	osa-u.5 for 4349359	osa-u.5 for 9270797	zma-u.5 for 103637649	zma-u.5 for 100285384	zma-u.5 for 100274259	tae-r.2 for 123141822	hvu-r.1 for 123439670	hvu-r.1 for 123449985	hvu-r.1 for 123402518	sbi-r.1 for 8058083	sbi-r.1 for 8061483	sbi-r.1 for 8068601	bdi-r.1 for 100828046	bdi-r.1 for 100840393	bdi-r.1 for 100844905	cre-r.1 for CHLRE_14g609202v5

Ortholog

Ortholog ID: 384

Species

ath

gma

bra

ppo

mtr

ghi

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

AT1G24140

AT1G59970

MMP

SMEP1

MMP2

MMP1

Function^*

Matrixin family protein

matrix metalloproteinase

metalloproteinase

metalloendoproteinase 2-MMP

metalloendoproteinase 5-MMP

metalloendoproteinase 1

metalloendoproteinase 4-MMP

metalloendoproteinase 1

metalloendoproteinase 2-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP

matrix metalloproteinase 2

matrix metalloproteinases protein 3

metalloendoproteinase 4-MMP

metalloendoproteinase 3-MMP-like

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 1

Metalloendoproteinase 5-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 2-MMP-like

metalloendoproteinase 1-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 3-MMP

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	3
bra00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00360	Phenylalanine metabolism	2
sot00940	Phenylpropanoid biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

839026

842291

843353

547880

100782143

103830895

103831562

103838570

18104342

11442232

25494610

11409998

107912216

107915776

107945266

102616119

101260125

101055590

102591586

102592086

107760134

107776901

9270797

103637649

100285384

100274259

123106099

123099138

123052586

123439670

123402518

123413262

8058083

8061483

8068601

100828046

100844905

100826984

5726898

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Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	3	2	1	3	3	1	2	2	1	3	3	3	1	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100262981 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100262981 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**