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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   petD   cytochrome b6/f complex subunit IV 
 sot-r.1   petD   cytochrome b6/f complex subunit IV 
 nta-r.1   petD   cytochrome b6/f complex subunit 4 
 ath-u.5   petD   cytochrome b6/f complex subunit IV 
 gma-u.5   petD   cytochrome b6/f complex subunit 4 
 vvi-u.5   petD   cytochrome b6/f complex subunit 4 
 ppo-u.5   petD   cytochrome b6/f complex subunit IV 
 mtr-u.5   petD   cytochrome b6/f complex subunit IV 
 mtr-u.5   120580180   cytochrome b6-f complex subunit 4 
 ghi-r.1   petD   cytochrome b6/f complex subunit 4 
 cit-r.1   petD   cytochrome b6/f complex subunit IV 
 osa-u.5   petD   cytochrome b6/f complex subunit IV 
 zma-u.5   petD   cytochrome b6/f complex subunit IV 
 sbi-r.1   petD   cytochrome b6/f complex subunit IV 
 bdi-r.1   petD   cytochrome b6/f complex subunit IV 

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Top 50 coexpressed genes to petD (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to petD (sly-u.5 coexpression data)

CoexMap"138338147"


slyLOC138338147 | Entrez gene ID : 138338147    
Species sly sot nta ath gma vvi ppo mtr ghi cit osa zma sbi bdi bra tae bna hvu cre
Paralog 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00195 [list] [network] Photosynthesis (83 genes)
GO BP
GO:0009767 [list] [network] photosynthetic electron transport chain  (18 genes)  IEA  
GO CC
GO:0042651 [list] [network] thylakoid membrane  (138 genes)  IEA  
GO MF
Protein XP_069144959.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  cyto_plas 3,  vacu 2,  golg 2,  cyto 1  (predict for XP_069144959.1)
Subcellular
localization
TargetP
other 8  (predict for XP_069144959.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
petD
sot-r.1
for
petD
nta-r.1
for
petD
ath-u.5
for
petD
gma-u.5
for
petD
vvi-u.5
for
petD
ppo-u.5
for
petD
mtr-u.5
for
petD
mtr-u.5
for
120580180
ghi-r.1
for
petD
cit-r.1
for
petD
osa-u.5
for
petD
zma-u.5
for
petD
sbi-r.1
for
petD
bdi-r.1
for
petD


Ortholog ID: 11812
Species sly sot nta ath gma vvi ppo mtr mtr ghi cit osa zma sbi bdi
Symbol petD petD petD petD petD petD petD petD LOC120580180 petD petD petD petD petD petD
Function* cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6-f complex subunit 4 cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot03010 Ribosome 4
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 9
nta00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 14
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 16
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo03010 Ribosome 6
ppo00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 11
mtr03010 Ribosome 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
ghi01200 Carbon metabolism 5
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 9
cit00195 Photosynthesis 7
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 12
osa00190 Oxidative phosphorylation 5
osa03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma03010 Ribosome 3
zma00190 Oxidative phosphorylation 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi00190 Oxidative phosphorylation 5
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 10
bdi00970 Aminoacyl-tRNA biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 3950401 4099875 800494 844728 3989328 4025130 4929704 5333124 120580180 3989135 4271183 3131404 845193 4549222 6439850
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