ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	104649657	uncharacterized LOC104649657
sly-u.5	101263629	B3 domain-containing protein At4g01580-like
ath-u.5	AT3G18960	AP2/B3-like transcriptional factor family protein
ath-u.5	VRN1	AP2/B3-like transcriptional factor family protein
ath-u.5	AT4G01580	AP2/B3-like transcriptional factor family protein
gma-u.5	100806715	B3 domain-containing transcription factor VRN1
gma-u.5	100813285	B3 domain-containing transcription factor VRN1
ppo-u.5	7457510	B3 domain-containing transcription factor VRN1

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(1883 genes)

IEA

Protein

XP_069151575.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 2, chlo 1, plas 1, cysk_nucl 1, golg_plas 1

(predict for XP_069151575.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_069151575.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 104649657	sly-u.5 for 101263629	ath-u.5 for AT3G18960	ath-u.5 for VRN1	ath-u.5 for AT4G01580	gma-u.5 for 100806715	gma-u.5 for 100813285	ppo-u.5 for 7457510

Ortholog ID: 406

Species

sly

sot

nta

ath

gma

bra

vvi

bna

cit

Symbol

RTV1

Function^*

B3 domain-containing protein At4g01580-like

B3 domain-containing transcription factor VRN1-like

B3 domain-containing protein At1g49475-like

AP2/B3-like transcriptional factor family protein

uncharacterized protein

B3 domain-containing transcription factor VRN1

B3 domain-containing protein At3g18960

cytochrome P450 82C4-like

B3 domain-containing protein At3g18960

B3 domain-containing transcription factor VRN1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot00010	Glycolysis / Gluconeogenesis	2
sot00051	Fructose and mannose metabolism	2
sot00562	Inositol phosphate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	3
ath04075	Plant hormone signal transduction	3
ath00640	Propanoate metabolism	2
ath01230	Biosynthesis of amino acids	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2
gma03015	mRNA surveillance pathway	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	4
bra00061	Fatty acid biosynthesis	4
bra01212	Fatty acid metabolism	4
bra00780	Biotin metabolism	3
bra00620	Pyruvate metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

101263629

102595417

107828317

841371

841372

100806715

103869503

103869505

100265476

106446858

106446859

102626309

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 104649657 (sly-u.5 coexpression data)

Top 50 enrichment test to 104649657 (sly-u.5 coexpression data)


Species	sly	ath	gma	ppo	bdi	mtr	bra	hvu	vvi	cit	bna	sbi	ghi	osa	sot	nta	cre	tae	zma
Paralog	2	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 104649657 (sly-u.5 coexpression data)

Top 50 enrichment test to 104649657 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**